FC930602

Overview
NameFC930602
Unique NameFC930602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 413.69 bits (1062), Expect = 5.662e-115
Identity = 198/226 (87.61%), Postives = 206/226 (91.15%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 7.394e-115
Identity = 199/226 (88.05%), Postives = 205/226 (90.71%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDS+LQLERINVYYNEAS GR+VPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDR MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRTMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB2_ORYSJ (Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 7.394e-115
Identity = 198/226 (87.61%), Postives = 205/226 (90.71%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDSDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVRSGP+G IFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 1.261e-114
Identity = 196/226 (86.73%), Postives = 206/226 (91.15%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILH+QGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGSSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.647e-114
Identity = 198/224 (88.39%), Postives = 204/224 (91.07%), Query Frame = 3
Query:   99 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            EI+HIQGGQCGNQIGAKFWEV+C EHGID TG+Y GD+DLQLERINVYYNEAS GRYVPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 EIVHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 224          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.670e-114
Identity = 197/226 (87.17%), Postives = 205/226 (90.71%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREI+HIQGGQCGNQIGAKFWEV+ DEHGID TG Y GDSDLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TPTF DLN
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.670e-114
Identity = 197/226 (87.17%), Postives = 205/226 (90.71%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SDLQLER+NVYYNEAS GR+VP AVLMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFVPGAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.670e-114
Identity = 197/229 (86.03%), Postives = 207/229 (90.39%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSG---DSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG+Y G   +SDLQLERINVY+NEASGGRYVPRAVLMDLEPGTMDS+RSGP+GQIFRPDN VFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISK+REEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 229          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.670e-114
Identity = 195/226 (86.28%), Postives = 206/226 (91.15%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+Y G SD+QLER+NVYYNEAS GR+VPRAVLMDLEPGTMD+VR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYMGTSDVQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.670e-114
Identity = 197/226 (87.17%), Postives = 205/226 (90.71%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREI+HIQGGQCGNQIGAKFWEV+ DEHGID TG Y GDSDLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TPTF DLN
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLN 226          
The following BLAST results are available for this feature:
BLAST of FC930602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB1_ORYSJ5.662e-11587.61Tubulin beta-1 chain OS=Oryza sativa subsp. japoni... [more]
TBB9_GOSHI7.394e-11588.05Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB2_ORYSJ7.394e-11587.61Tubulin beta-2 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_GOSHI1.261e-11486.73Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB2_PEA1.647e-11488.39Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB_CHLRE3.670e-11487.17Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB8_MAIZE3.670e-11487.17Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=... [more]
TBB2_SOLTU3.670e-11486.03Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB2_MAIZE3.670e-11486.28Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB1_VOLCA3.670e-11487.17Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009C09EF PostHarvC1 Citrus clementina cDNA clone C34009C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930602 ID=FC930602; Name=FC930602; organism=Citrus clementina; type=EST; length=771bp
GATTCTCACTCGCGACTCGCCAACCCCTACGTCTTCCCAAACTTTCTCGC
AAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGA
AATCTTGCACATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGT
TCTGGGAGGTCATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTAC
AGCGGAGACTCCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGA
GGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGC
CTGGGACCATGGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGC
CCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAA
GGGTCATTACACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTG
TTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGT
CATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTC
CAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCT
TCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACC
CTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAGTGTATGGTGCTAGA
TAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCACCC
CTACTTTTGNTGATCTTAACA
back to top