FC930602

Overview
NameFC930602
Unique NameFC930602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 3.670e-114
Identity = 197/229 (86.03%), Postives = 207/229 (90.39%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSG---DSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG+Y G   +SDLQLERINVY+NEASGGRYVPRAVLMDLEPGTMDS+RSGP+GQIFRPDN VFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISK+REEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 229          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 4.793e-114
Identity = 196/226 (86.73%), Postives = 205/226 (90.71%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREI+HIQGGQCGNQIGAKFWEV+ DEHG+D TG Y GDSDLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TPTF DLN
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB7_ARATH (Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 409.453 bits (1051), Expect = 1.068e-113
Identity = 197/226 (87.17%), Postives = 206/226 (91.15%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIG+KFWEV+  EHGID TG+Y GDS+LQLER+NVYYNEAS GRYVPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 409.453 bits (1051), Expect = 1.068e-113
Identity = 196/226 (86.73%), Postives = 206/226 (91.15%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MR+ILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y+GDSDLQLERI+VYYNEASGGR+VPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MVLDNEALYDICFR LKL+ P+F DLN
Sbjct:    1 MRQILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERIDVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRILKLSNPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 1.395e-113
Identity = 198/226 (87.61%), Postives = 204/226 (90.27%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDSDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVRSGP+G IFRPDNFVFGQSGAGNN AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYGGDSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNSAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSAMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 3.107e-113
Identity = 196/226 (86.73%), Postives = 204/226 (90.27%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GD+ LQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSG +GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYEGDNVLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 9.039e-113
Identity = 194/226 (85.84%), Postives = 205/226 (90.71%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+   +SDLQL+RINVYYNEASGGRYVPRAVLMDLEPGTMDSV++GP GQIFRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC+CLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLS HQLVENADECMVLDNEALYDICFRTLKL+TP+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQVLSESDLQLDRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSGHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.542e-112
Identity = 197/226 (87.17%), Postives = 203/226 (89.82%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MRE LHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDS+LQLERINVYYNEAS GR+V RAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MVLDNEALYDICFRTLKL TP+F DLN
Sbjct:    1 MRESLHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDSELQLERINVYYNEASCGRFVRRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMVLDNEALYDICFRTLKLTTPSFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 2.630e-112
Identity = 195/226 (86.28%), Postives = 203/226 (89.82%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREI+HIQGGQCGNQIGAKFWEV+ DEHGID TG   GDSDLQLERINVY+NEA+G RYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TPTF DLN
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTALGDSDLQLERINVYFNEATGSRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLN 226          
BLAST of FC930602 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 3.435e-112
Identity = 195/226 (86.28%), Postives = 201/226 (88.94%), Query Frame = 3
Query:   93 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFXDLN 770
            MREILHIQGGQCGNQIGAKFWEVIC EHG+D TG YSG S  QLERINVYYNEA GGRYVPRAVLMDLEPGTM+S+R+GPFG IFRPDNFV+GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL  P+F DLN
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDSTGCYSGVSPQQLERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLN 226          
The following BLAST results are available for this feature:
BLAST of FC930602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB1_SOLTU3.670e-11486.03Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB_CHLIN4.793e-11486.73Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB7_ARATH1.068e-11387.17Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB1_PEA1.068e-11386.73Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB1_MAIZE1.395e-11387.61Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=... [more]
TBB2_LUPAL3.107e-11386.73Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=... [more]
TBB2_DAUCA9.039e-11385.84Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB2_SOYBN1.542e-11287.17Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB_POLAG2.630e-11286.28Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB3_MAIZE3.435e-11286.28Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC34009C09EF PostHarvC1 Citrus clementina cDNA clone C34009C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930602 ID=FC930602; Name=FC930602; organism=Citrus clementina; type=EST; length=771bp
GATTCTCACTCGCGACTCGCCAACCCCTACGTCTTCCCAAACTTTCTCGC
AAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGA
AATCTTGCACATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGT
TCTGGGAGGTCATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTAC
AGCGGAGACTCCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGA
GGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGC
CTGGGACCATGGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGC
CCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAA
GGGTCATTACACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTG
TTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGT
CATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTC
CAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCT
TCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACC
CTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAGTGTATGGTGCTAGA
TAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCACCC
CTACTTTTGNTGATCTTAACA
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