FC930603

Overview
NameFC930603
Unique NameFC930603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930603_ssr133 microsatellite FC930603_ssr133:133..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11971 contig Ccv1_Contig11971:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 43/140 (30.71%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683
            S+YVG++H  VTE +L E FS  GP+   +    LI    S+Y ++++   + A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIFV +L   + +  L+   S + +     V+ D+    S+G+GFV F
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHF 145          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  237 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683
            +P+G L    G    +  ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D   A  AI +LNG  L  + IKV++A  S      +   N++V  L   ++   +   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  240 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683
            PSG  P      T  S+YVG +   VTE +L E+F+S GPV   ++ R    +    Y ++++ +      A+  LN   + G+P ++ W+    QR+ +    G  N+F+ +L P + +  L   FS +      +V  D+  G ++G+GFV F
Sbjct:   72 PSGTAP------TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS----QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHF 215          

HSP 2 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 43/151 (28.48%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683
            +VY+ N+ T++TE    ++F   G +    L++   DK   +GF++Y +   A  A+  LN +   G+ + V  A    +RE+                    N+F+ +L  EV D  L A FS + + + A++M D++ G+S+GFGFV +
Sbjct:  262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCY 411          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  267 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 689
            DPS  R+    +++ N+H  +    L + FS+ G +  CK+   +      +GF+HY    +A  AI ++NG  L  + + V    +   RE       +   N++V +L+PEV +A     F  +   +   +  DQ+ G+SRGFGFV+F N
Sbjct:  137 DPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFEN 288          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 45/172 (26.16%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  201 HPGLLAAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNS 692
            +P   +AP++  + S +  P   PS  +    S+YVG +   VTE +L E+FSS G V   ++ R    +    Y +++Y +      A+  LN   + G+P ++ W+        T G  N+F+ +L   + +  L   F+ + +    +V  D+  G S+G+GFV +  +
Sbjct:   23 NPAATSAPEVTAVESAS--PSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETA 190          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683
            ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D   A  AI +LNG  L  + IKV++A  S      +   N++V  L   +    +   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 168          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 48/155 (30.97%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  237 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683
            +P+G L    G    +  ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D   A  AI +LNG  L  + IKV++A  S      +   N++V  L   ++   +   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  267 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI---RKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGH-----FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 680
            +PS    ++VGN+   V    L  +F   G VE  ++I     D+S  +GF+       A  A+   N   L G+ + VN A   G R + +       F ++VG+L  +V +  L   FS +    +ARV++D++TGRSRGFGFV+
Sbjct:  145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 41/140 (29.29%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145          
BLAST of FC930603 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 41/140 (29.29%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  285 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 683
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+ ++N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145          
The following BLAST results are available for this feature:
BLAST of FC930603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PABP3_HUMAN1.043e-1130.71Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
ELAV3_MOUSE1.043e-1130.97ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
PABP_SCHPO1.363e-1129.03Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU1.363e-1129.41Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI1.780e-1126.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV3_XENLA1.780e-1132.12ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV3_HUMAN1.780e-1130.97ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ROC3_ARATH2.324e-1132.6531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
PABPB_XENLA2.324e-1129.29Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABPA_XENLA2.324e-1129.29Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionC34009C10EF PostHarvC1 Citrus clementina cDNA clone C34009C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930603 ID=FC930603; Name=FC930603; organism=Citrus clementina; type=EST; length=723bp
TTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTCTTTTCCTCATTTTCTCGA
GAAACCCTAACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGG
ATTCTGAAGGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGC
AACAACAAGCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTAT
CATCCCGGCCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAA
TCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAA
ACATACATACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGT
ACTGGTCCAGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATA
CGGATTTATTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTT
CTCTTAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCA
TATGCCAGTGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGT
TGGTGATCTGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTT
CTGTTTATCCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACT
GGGCGTTCTAGAGGCTTTGGCTTTGTTTCTTTCCGGAACAGCAGGATGCC
CAAGTGCGATAACGATCTACTGG
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