FC930611

Overview
NameFC930611
Unique NameFC930611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5628 contig Ccv1_Contig5628:230..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 7.364e-31
Identity = 71/196 (36.22%), Postives = 113/196 (57.65%), Query Frame = 1
Query:   10 PNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT---TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            PN++L +A A+ S  + WVQ NI  ++P  K + +++GNEV   P N    + FL+ AM+NVYN+L    L   +KV++    G L N+YPP    F+ +  +  + P++EFL + +  L+ N YP+F +  N   + L YALF          N   Y NLFDA LD+++ A+      +V+++V+E+GWPS G+
Sbjct:   90 PNQDL-EALANSSIANGWVQDNIRSHFPYVKFKYISIGNEV--SPSNNGQYSQFLLHAMENVYNALAAAGLQDKIKVTTATYSGLLANTYPPKDSIFREEF-KSFINPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFNQQ-----GTNSTGYQNLFDALLDSIYFAVEKAGGPNVEIIVSESGWPSEGN 276          

HSP 2 Score: 23.0978 bits (48), Expect = 7.364e-31
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  636 NLVRRVLSGSGTPLRP 683
            NLV  V  G+GTP +P
Sbjct:  290 NLVNHVKGGAGTPKKP 305          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.118e-30
Identity = 70/190 (36.84%), Postives = 106/190 (55.79%), Query Frame = 1
Query:   28 KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT---TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            ++  D S  + WVQ NI  ++P  K + +AVGNEV   P N     PF+ PAM+NVYN+L    L   +KVS+    G L N+YPP    F+ +     + P+++FL + +  L+ N YP+F +  N   + L YALF          N   Y NLFDA LD+++ A+      +V+++V+E+GWPS G+
Sbjct:   91 QSLTDPSRANGWVQDNIINHFPDVKFKYIAVGNEV--SPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGE-FNSFINPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQ-----QEANPAGYQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGN 272          

HSP 2 Score: 24.2534 bits (51), Expect = 2.118e-30
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  636 NLVRRVLSGSGTPLRP 683
            NL+  V SG+GTP +P
Sbjct:  286 NLINHVKSGAGTPKKP 301          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = 1
Query:   10 PNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            P+ +L + A+ Q+  D WVQ N+  Y    +   + VGNEV     +   FL+ AM+N+ N++    L+  VKVS+ IA     ++ PPS G F+ D  +  L+P++ FL    S L+VN YP+F+Y  +   I LDYALF      VD+  G  Y NLFDA LD+V+AA+       +++VV+ETGWP+ G
Sbjct:   86 PSSDLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEV---KPSVGGFLLQAMQNIENAVSGAGLE--VKVSTAIATDTTTDTSPPSQGRFR-DEYKSFLEPVIGFLASKQSPLLVNLYPYFSYMGDTANIHLDYALFTAQ-STVDNDPGYSYQNLFDANLDSVYAALEKSGGGSLEIVVSETGWPTEG 270          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13B_SOYBN (Glucan endo-1,3-beta-glucosidase (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.701e-30
Identity = 69/190 (36.32%), Postives = 109/190 (57.37%), Query Frame = 1
Query:   16 EELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            +E  ++  D +   +WV   ++ Y      + +AVGNE+  +  N   +++ AM N+ N++   K    +KVS+ I    + NSYPP+ G F SD  EP +KP++ FL    + L+ N YP+FAY AN   I L YALF          N + Y NLFDA LD+++AA+  +  +++++VV+E+GWPS G
Sbjct:   11 KETLQSLTDSNAATDWVNKYVTPYSQDVNFKYIAVGNEIHPNT-NVAQYILSAMTNIQNAISSRKF--TIKVSTAIDSTLITNSYPPNDGVFTSDA-EPYIKPIINFLVSNGAPLLANVYPYFAY-ANDQSIPLAYALFTQQ-----GNNDVGYQNLFDAMLDSIYAALENVGASNLQIVVSESGWPSEG 190          

HSP 2 Score: 26.1794 bits (56), Expect = 4.701e-30
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  630 HGNLVRRVLSGSGTPLRP 683
            + NL+R   SG GTP RP
Sbjct:  203 YANLIRHASSGDGTPKRP 220          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13I_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-N (Fragment) OS=Nicotiana tabacum GN=PRN PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.113e-30
Identity = 69/190 (36.32%), Postives = 106/190 (55.79%), Query Frame = 1
Query:   28 KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT---TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            ++  D S  + WVQ NI  ++P  K + +AVGN+V   P N     PF+ PAM+NVYN+L    L   +KVS+    G L N+YPP    F+ +     + P+++FL + +  L+ N YP+F +  N   + L YALF          N   Y NLFDA LD+++ A+      +V+++V+E+GWPS G+
Sbjct:   23 QSLTDPSRANGWVQDNIINHFPDVKFKYIAVGNKV--SPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGE-FNSFINPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQ-----QEANPAGYQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGN 204          

HSP 2 Score: 24.2534 bits (51), Expect = 6.113e-30
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  636 NLVRRVLSGSGTPLRP 683
            NL+  V SG+GTP +P
Sbjct:  218 NLINHVKSGAGTPKKP 233          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.032e-29
Identity = 70/196 (35.71%), Postives = 114/196 (58.16%), Query Frame = 1
Query:   10 PNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT---TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            PN++L +A A+ S  + WVQ NI  ++P  K + +++GNEV   P N    + FL+ AM+NVYN+L    L   +KV++    G L N+YPP +  F+ +     + P+++FL + +  L+ N YP+F + +N   + L YALF          N   Y NLFDA LD+++ A+      +V+++V+E+GWPS G+
Sbjct:   86 PNQDL-EALANSSIANGWVQDNIRSHFPYVKFKYISIGNEV--SPINNGQYSQFLLHAMENVYNALAASGLQDKIKVTTATYSGLLANTYPPKASIFRGE-FNSFINPIIQFLAQNNLPLLANVYPYFVHISNTADVPLSYALFTQR-----GKNSAGYQNLFDAILDSMYFAVEKAGGPNVEIIVSESGWPSEGN 272          

HSP 2 Score: 21.557 bits (44), Expect = 1.032e-29
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  636 NLVRRVLSGSGTPLRP 683
            NL+  V  G+GTP +P
Sbjct:  286 NLIDHVKRGAGTPKKP 301          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.877e-29
Identity = 73/192 (38.02%), Postives = 113/192 (58.85%), Query Frame = 1
Query:   13 NEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAM-SAISYNDVKVVVTETGWPSVG 585
            N +L+  A+D S+  +WV + +  +  A     +  GNEV   P  +   ++PAMKN+  +L    L  +V V++ +A   L  SYPPS G+F S+   P + P++  L  + + L+VN YP+FAYSA+   + LDYAL   +     + NG++Y N+FDA LDAV+AA+  A     +++VV+ETGWPS G
Sbjct:   62 NSDLAPLASDASYAASWVHSYVQPFAGAVSFRYINAGNEVI--PGESAALVLPAMKNLEAALQAAGL--SVPVTTAMATSVLGTSYPPSQGTF-SEAALPTVGPIVSHLASSGTPLLVNVYPYFAYSADPSSVRLDYALLSSSAAVAVTDNGVEYANMFDAILDAVYAAVEKAGGGESLELVVSETGWPSGG 248          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.967e-29
Identity = 73/194 (37.63%), Postives = 115/194 (59.28%), Query Frame = 1
Query:   10 PNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA--DPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            PN++L +A A+ S    WVQ NI  ++P  K + +AVGNEV    D      F+ PAM+N+YN+L    L + +KVS+   LG L N+YPP    F+ D  +  + P++ FL + +  L+ N YP+F ++   D + L YALF+   G  D+G    Y NLFDA +D+++ A   +   +++++V+E+GWPS G
Sbjct:   80 PNQDL-EALANPSKRQGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFR-DEYKSFINPIIGFLSRHNLPLLANIYPYFGHA--DDNVPLPYALFKQQ-GLNDAG----YQNLFDALVDSMYFATEKLGGQNIEIIVSESGWPSEG 264          

HSP 2 Score: 22.7126 bits (47), Expect = 2.967e-29
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  636 NLVRRVLSGSGTPLRP 683
            NL+  V  G+GTP +P
Sbjct:  279 NLINHVKGGAGTPKKP 294          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.182e-29
Identity = 73/193 (37.82%), Postives = 111/193 (57.51%), Query Frame = 1
Query:   13 NEELSKAAADQSFTDNWVQANISKYYPA-TKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQV-DSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            N +++  A   S   +WV AN+  Y+ A   I  +AVGNE+      +   ++ AM+N+  +L   +L   +KVS+ +    + NS+PPSS  F     +P +  +   L  T++ L+ N YP+FAYS N   I L+YA F+     V D+GNGL YTNLF+A +DA++AA+       V+VVV+E+GWPS G
Sbjct:   56 NNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEITGGAAQS---ILAAMRNLNKALAAARL-GGIKVSTAVRFDVITNSFPPSSAVFA----QPYMVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQPGATPVRDAGNGLIYTNLFNAMVDAMYAALEKAGAPSVRVVVSESGWPSAG 240          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.104e-28
Identity = 75/198 (37.88%), Postives = 109/198 (55.05%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTD---NWVQANISKYYPATKIEAVAVGNEVF-ADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYP-PSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPS 579
            V+ PN  L   A   +  D   +W++AN+S Y PAT +  +  GNE+  +   N    L+PAM+ +  +L    L + V+V++P  LG L  S   PS+ SF++         ML+F R T S  MVN YP+F+Y       +L+YALFR N G  D    L YT++ DAQ+DA++ AM  + Y DV + V E GWP+
Sbjct:   78 VSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMRRLAQALKAEGL-TGVRVTTPHYLGILAPSDGIPSNASFRAGYNTKLFPAMLQFHRDTGSPFMVNPYPYFSYRPE----TLNYALFRPNSGIYDPATKLNYTSMLDAQMDAIYTAMKKLGYGDVDIAVGEAGWPT 270          

HSP 2 Score: 23.483 bits (49), Expect = 1.104e-28
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  639 LVRRVLSGSGTPLRP-RTHLTFTSSL 713
            ++R   SG GTPL P RT  T+  SL
Sbjct:  291 MIRVCSSGKGTPLMPNRTFETYLFSL 316          
The following BLAST results are available for this feature:
BLAST of FC930611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13C_TOBAC7.364e-3136.22Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13G_TOBAC2.118e-3036.84Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13A_ARATH2.218e-3039.06Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_SOYBN4.701e-3036.32Glucan endo-1,3-beta-glucosidase (Fragment) OS=Gly... [more]
E13I_TOBAC6.113e-3036.32Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13L_TOBAC1.032e-2935.71Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13F_HORVU1.877e-2938.02Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
E13A_SOLLC2.967e-2937.63Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13D_HORVU4.182e-2937.82Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13B_WHEAT1.104e-2837.88Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]

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Properties
Property NameValue
Genbank descriptionC34009D07EF PostHarvC1 Citrus clementina cDNA clone C34009D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930611 ID=FC930611; Name=FC930611; organism=Citrus clementina; type=EST; length=718bp
GTTGCGTTCCCCAATGAGGAACTCTCCAAGGCCGCAGCTGACCAGTCATT
TACTGACAACTGGGTCCAGGCCAATATCTCCAAGTACTACCCGGCAACGA
AGATCGAGGCCGTCGCAGTGGGCAACGAAGTCTTCGCAGACCCGAAGAAC
ACGACGCCGTTTCTCGTCCCCGCCATGAAGAACGTTTACAACTCCTTGGT
TAAGTACAAGCTTGATTCTAACGTTAAAGTCTCCTCTCCTATTGCTTTAG
GTGCGTTACAAAATTCGTACCCGCCATCTTCCGGGTCGTTCAAATCGGAT
CTCATCGAGCCCGCTTTGAAACCCATGTTGGAGTTTCTACGTAAGACGTC
GTCGTATCTCATGGTTAATGCGTATCCTTTTTTCGCCTACTCTGCTAACG
CGGATAAGATATCTTTAGACTACGCTTTGTTTAGGGATAATCCCGGTCAA
GTGGATTCAGGTAACGGGCTGAAGTATACTAACCTTTTTGACGCCCAACT
CGACGCCGTTTTCGCTGCCATGTCAGCAATCAGTTATAACGACGTGAAGG
TTGTGGTGACGGAGACTGGATGGCCGTCTGTGGGTGACGAGAATGAGGCG
GGTGCTGGTGCGGCCAATGCCGCGGCGTACACGGGAATCTAGTACGTAGA
GTCTTGTCTGGAAGTGGGACCCCCTTGAGACCAAGGACCCACTTAACGTT
TACCTCTTCGCTTTGTTC
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