FC930614

Overview
NameFC930614
Unique NameFC930614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig588 contig Ccv1_Contig588:20..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930614 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 6.742e-69
Identity = 135/181 (74.59%), Postives = 149/181 (82.32%), Query Frame = 3
Query:  168 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 698
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT +DRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNTM G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189          
BLAST of FC930614 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 5.707e-68
Identity = 135/185 (72.97%), Postives = 148/185 (80.00%), Query Frame = 3
Query:  168 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 698
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGN
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGN 194          
BLAST of FC930614 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.454e-68
Identity = 131/180 (72.78%), Postives = 146/180 (81.11%), Query Frame = 3
Query:  168 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 698
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNTMDGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 186          
BLAST of FC930614 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.651e-65
Identity = 128/180 (71.11%), Postives = 144/180 (80.00%), Query Frame = 3
Query:  168 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKK--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 698
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 188          
BLAST of FC930614 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.244e-64
Identity = 123/189 (65.08%), Postives = 145/189 (76.72%), Query Frame = 3
Query:  135 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 698
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGN
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGN 196          
BLAST of FC930614 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.175e-42
Identity = 88/160 (55.00%), Postives = 110/160 (68.75%), Query Frame = 3
Query:  228 SRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 698
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGN
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGN 171          
BLAST of FC930614 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 69/126 (54.76%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  321 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 698
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGG              KMGINPIMMSAGELESGN
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMSAGELESGN 74          
BLAST of FC930614 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  498 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 692
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELES 68          
BLAST of FC930614 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  498 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 692
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELES 68          
The following BLAST results are available for this feature:
BLAST of FC930614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ORYSJ6.742e-6974.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE5.707e-6872.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU7.454e-6872.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.651e-6571.11Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.244e-6465.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE9.175e-4255.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.922e-2354.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC5.787e-2067.69Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP7.558e-2067.69Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC34009D10EF PostHarvC1 Citrus clementina cDNA clone C34009D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930614 ID=FC930614; Name=FC930614; organism=Citrus clementina; type=EST; length=700bp
GACTCTGATCTTCAATTCTCTCCTCAAAGAGCACAACACGCACCCAGCGC
ATTGCTTCGCTTTCCTTTGCCTGCATTGCAGCGTGACCCTTTAGCTACTT
CAATCACAGCCGTCCAATTCTCGCTAGCCTAATGGCTGCTGCTGTACCGT
TGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCCCAAGCTCATCTTTC
TTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATCCCCCCATCCAAGGT
CCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGATGAGAACAAGCAGA
CCAAGAAGGACAGATGGAAGGGCCTTGCCTACGACGAATCTGATGACCAA
CAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAGCCCC
CATGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCA
GCCAAGGTCTCCGCACATACAACTTGGACAACACGATGGACGGTCTCTAC
ATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTT
CATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTTGGGGAG
GCAAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATG
GGCATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGC
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