FC930618

Overview
NameFC930618
Unique NameFC930618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930618 vs. ExPASy Swiss-Prot
Match: PLD_PHYIN (Phospholipase D OS=Phytophthora infestans GN=PLD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 61/189 (32.28%), Postives = 91/189 (48.15%), Query Frame = 2
Query:   23 QIADKIRAHERFAAYIVIPMWP--EG-VPTGAATQ--RILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQ---IYGYRMSLWAEHLGYIED 565
            +I   ++  E+F  Y+V+P+ P  EG + +   T    ++ WQ  T+     ++++AL  V       P++Y+ FF L    ++             PN   A  +      IY+HSK MI DD   ILGSANIN RSM G RD+EIA+     +Y    M   PY +       R+ L+ EHLG  +D
Sbjct: 1162 RIERAVQRDEKFRVYVVMPLLPAFEGNIRSHELTNLHAVMHWQFATICRGRYSLFEALKGV----TNHPENYVAFFGLRKYGIM-------------PNGCAATEQ------IYIHSKLMIADDRCAILGSANINDRSMNGDRDSEIALVIEDMQYEDGVMNEKPYRRGVAASKLRLQLFREHLGLADD 1327          
BLAST of FC930618 vs. ExPASy Swiss-Prot
Match: PLDP2_ARATH (Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 65/185 (35.14%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   38 IRAHER---FAAYIVIPMWPE---GVPT-GAATQRILF-WQHKTMQMMYETIYKALVEVGLEGAFSP--QDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPY--GQI-YGYRMSLWAEHLG 553
            ++AHE    F   IVIP+ P    G+   GAAT R L  WQ++T+     +I        L     P  QDY++F+ L +   + +            + P A S+      IYVHSK MIVDD   ++GS+NIN RS+ G+RD+EI +     E+  + M    +  G+  Y  R SLW+EHLG
Sbjct:  760 LKAHEENKCFRVVIVIPLLPGFQGGIDDFGAATVRALMHWQYRTISREGTSILD-----NLNALLGPKTQDYISFYGLRSYGRLFE------------DGPIATSQ------IYVHSKLMIVDDRIAVIGSSNINDRSLLGSRDSEIGVVIEDKEFVESSMNGMKWMAGKFSYSLRCSLWSEHLG 921          
BLAST of FC930618 vs. ExPASy Swiss-Prot
Match: PLD1_HUMAN (Phospholipase D1 OS=Homo sapiens GN=PLD1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 64/193 (33.16%), Postives = 96/193 (49.74%), Query Frame = 2
Query:   14 IALQIADKIRAHERFAAYIVIPMWP--EG-VPTGA--ATQRILFWQHKTMQMMYETIYKAL-VEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARM--KRHPYGQI-YGYRMSLWAEHLGYIED 565
            IA +I    R ++++  Y+VIP+ P  EG + TG   A Q I+ + ++TM     +I   L  E+G +      +Y++F  L       +T   L GN                 +IYVHSK +I DD  VI+GSANIN RSM G RD+E+A+     E   + M  K +  G+   G R+  +   LGY++D
Sbjct:  801 IAQRILKAHRENQKYRVYVVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGENSILGQLKAELGNQWI----NYISFCGL-------RTHAELEGNLVTE-------------LIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAVIVQDTETVPSVMDGKEYQAGRFARGLRLQCFRVVLGYLDD 969          
BLAST of FC930618 vs. ExPASy Swiss-Prot
Match: PLD1_RAT (Phospholipase D1 OS=Rattus norvegicus GN=Pld1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 66/193 (34.20%), Postives = 95/193 (49.22%), Query Frame = 2
Query:   14 IALQIADKIRAHERFAAYIVIPMWP--EG-VPTGA--ATQRILFWQHKTMQMMYETIYKALV-EVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARM--KRHPYGQI-YGYRMSLWAEHLGYIED 565
            IA +I    R  +R+  YIVIP+ P  EG + TG   A Q I+ + ++TM     +I + L  E+G +      +Y++F  L       +T   L GN                 +IYVHSK +I DD  VI+GSANIN RSM G RD+E+A+     E   + M  K +  G+   G R+  +   LGY+ D
Sbjct:  801 IAQRILKAHREGQRYRVYIVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGESSILEQLKPELGNKWI----NYISFCGL-------RTHAELEGNLVTE-------------LIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAVIVQDTETVPSVMDGKEYQAGRFAQGLRLECFRLVLGYLSD 969          
BLAST of FC930618 vs. ExPASy Swiss-Prot
Match: PLDB_DICDI (Phospholipase D B OS=Dictyostelium discoideum GN=pldB PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 54/190 (28.42%), Postives = 86/190 (45.26%), Query Frame = 2
Query:   14 IALQIADKIRA----HERFAAYIVIPMWPEGVPTGAATQRILFWQHKTM----QMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPEALSRKSGRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARMKRHPY--GQI-YGYRMSLWAEHL 550
            IAL I +++R      E+F   I++P+ P G    A+++ I+ W ++T+    Q + E +     +V L+   S      +   G+R   +Q                          IYVHSK +IVDD   ++GS NIN RSM G+RD+E+A+           M   P+  G+  +  R+ LW  HL
Sbjct:  946 IALAILNRVRRAITLKEKFRVIIMVPISPSGDLALASSRMIIGWTNRTISQGGQSILELLKNEFPDVDLDQYISFNSIRQWEANGDRIFTEQ--------------------------IYVHSKVLIVDDRVAVIGSCNINDRSMMGSRDSELAVVVSDQSKLLITMNGKPFKVGKFPHTLRVGLWKTHL 1109          
The following BLAST results are available for this feature:
BLAST of FC930618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PLD_PHYIN2.414e-1332.28Phospholipase D OS=Phytophthora infestans GN=PLD P... [more]
PLDP2_ARATH4.118e-1335.14Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP... [more]
PLD1_HUMAN2.951e-1133.16Phospholipase D1 OS=Homo sapiens GN=PLD1 PE=1 SV=1[more]
PLD1_RAT3.855e-1134.20Phospholipase D1 OS=Rattus norvegicus GN=Pld1 PE=1... [more]
PLDB_DICDI6.575e-1128.42Phospholipase D B OS=Dictyostelium discoideum GN=p... [more]

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Properties
Property NameValue
Genbank descriptionC34009E02EF PostHarvC1 Citrus clementina cDNA clone C34009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930618 ID=FC930618; Name=FC930618; organism=Citrus clementina; type=EST; length=706bp
GATTCCGATGGAAATTGCGCTCCAGATTGCTGATAAGATCAGAGCACATG
AGCGATTTGCTGCCTATATAGTTATTCCAATGTGGCCGGAAGGCGTTCCA
ACTGGTGCTGCTACACAAAGAATTTTATTTTGGCAGCACAAAACTATGCA
AATGATGTATGAGACAATCTACAAGGCATTAGTTGAGGTGGGGCTTGAGG
GTGCATTCTCACCGCAGGACTATTTGAACTTTTTCTGTCTGGGCAATCGT
GAGGTCATTGATCAAACTGACACTTCATTGTCTGGAAATCCAACAGCTCC
GAACACTCCTGAGGCCCTAAGTAGGAAGAGTGGACGATTCATGATTTATG
TTCATTCAAAAGGGATGATTGTTGATGATGAGTATGTGATACTGGGGTCT
GCAAACATCAATCAGCGCTCCATGGAGGGCACAAGAGACACAGAAATTGC
AATGGGAGCCTACCAACCTGAATATACTTGGGCTAGAATGAAACGTCATC
CTTATGGACAGATCTATGGATATAGAATGTCGCTATGGGCAGAACATCTT
GGATACATTGAGGACTGCTTCGGACAACCCGAGACTCTGGAATGTGTAAG
AAAGGTTAGATCAGTAGGCGAGAATACTGGCAGCAGTTTGCTGCAGATGA
TCAATCTGAAATGAGGAGCCACCTTATAAAGTACCAGTTGAAGTGGATCG
AAAAGG
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