FC930619

Overview
NameFC930619
Unique NameFC930619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 48/173 (27.75%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  166 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEA---SKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK-ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+N +W+    G      NPA  +++  V EA   D ++ ++A   A     +W  + A +RG ++ ++ D +      L  + S+  GK  L     ++Q VI    +  G + +++G  IP +  ++       P+GV G I  +NFP  +  W    AL CGN VV K A
Sbjct:   41 FINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPA 212          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 48/173 (27.75%), Postives = 79/173 (45.66%), Query Frame = 1
Query:  166 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+N +W     G     +NPA  + I  V E    D ++ +KA  +A +I   W  + A +RG ++ ++ D +      L  + +I  GK+     + ++   I    +  G + +++G  IPS+           P+GV G I  +NFP  +  W    AL CGN VV K A
Sbjct:   24 FINNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYLSDLGGSIKALKYCAGWADKIHGQTIPSDGDIFTFTRR-EPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPA 195          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 48/173 (27.75%), Postives = 78/173 (45.09%), Query Frame = 1
Query:  166 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+N +W     G      NPA  +K+  V E   ED  + + A  +A +I   W  + A +RG ++ ++ D +      L  + S+  GK+     + ++   +    +  G + ++ G  IPS+  N        P+GV G I  +NFP  +  W    AL CGN VV K A
Sbjct:   23 FINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDG-NFFTYTRHEPVGVCGQILPWNFPLLMFLWKIAPALSCGNTVVVKPA 194          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 48/173 (27.75%), Postives = 80/173 (46.24%), Query Frame = 1
Query:  166 FVNGKWKAH--GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+N +W +   G      NPA  +K+  V E   ED ++ +KA  +A +I   W  + A +RG ++ ++ D +      L  + ++  GK+     + ++   I    +  G + ++ G  IP +  N        P+GV G I  +NFP  +  W    AL CGN VV K A
Sbjct:   24 FINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDG-NFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPA 195          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 44/174 (25.29%), Postives = 79/174 (45.40%), Query Frame = 1
Query:  160 GCFVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            G F+N +     HG  V   +P+  + I  V +A  ED +  +K    A +    W +  + +RG  + ++ D + + L +L  + +++ GK +    G+VQ   D   +  G + +  G  I ++           P+GV G I  +NFP  +  W    A+ CGN ++ K A
Sbjct:   24 GLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQTIETDI-KRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTA 196          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: SSDH_PANTR (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan troglodytes GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 46/167 (27.54%), Postives = 78/167 (46.71%), Query Frame = 1
Query:  166 FVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            FV G+W     T    +PA+   +  V +  + +    ++A  EA   W E+ A +R  ++R+  + + +    L R+++ E GK L E  GE+       ++    +R++ G +I +   +   L    P GV  VIT +NFP A++      AL  G  VV K A
Sbjct:   64 FVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDIIYTPAKDRRALVLKQPXGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPA 230          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: GAPN_STREI (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equinus GN=gapN PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 45/171 (26.32%), Postives = 78/171 (45.61%), Query Frame = 1
Query:  166 FVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVI------PSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +VNG+WK     +    PA  +++ +V   S E+ +    +   A K W  L   +R E + +  D L      +G +LS E+ K     +GEV    ++ ++A     +L G V+      P+ +    ++    P+G+V  I+ FN+P  + G     AL+ GN V  K
Sbjct:    8 YVNGEWKLSKEEIKIYAPATGEELGSVPAMSQEEVDYVYASAKAAQKAWRALSYVERAEYLHKAADILMRDAEKIGAVLSKEIAKGYKSAVGEVIRTAEIINYAAEEGVRLEGEVLEGGSFDPASKKKIAIVRR-EPVGLVLAISPFNYPINLAGSKIAPALISGNVVALK 177          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: ASTD_CHRVO (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Chromobacterium violaceum GN=astD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 48/166 (28.92%), Postives = 79/166 (47.59%), Query Frame = 1
Query:  166 FVNGKWKA-HGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            F++GKW A  G  ++  NPA+N  +     AS    +  ++A   A   W  +   +R +VVR+ G+ L E+   L R+++ E GK L E   EV  ++   D ++    +  G    +      +L    P GVV V   +NFP  +   +   AL+ GN V++K
Sbjct:    5 FIDGKWLAGDGEAMAKTNPADNAPLWQGRAASAAQVDAAVRAARAAFPAWARMGLEERAKVVRRFGERLTERKAELARVIAQETGKPLWEATTEVTTMVGKIDISLKALAERTGERAAAMGDAQAVLRH-KPHGVVAVFGPYNFPGHLPNGHIVPALLAGNSVIFK 169          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: AL1B1_BOVIN (Aldehyde dehydrogenase X, mitochondrial (Fragment) OS=Bos taurus GN=ALDH1B1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 1
Query:  145 SPETPG--CFVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            +P+ P    F++ KW       T  +++PA  + I  V E    D +   KA   A ++   W  + A KRG ++  + D +     +L  L S++ GK   E  + ++ EVI +  +  G + + +G  IP +   H       P+GV   I  +NFP  +  W   +AL  GN VV K A
Sbjct:   25 NPDIPDNQLFISNKWHDAVSKKTFPTVSPATGEVIGHVAEGDWADVDLAAKAARAAFRLGSPWRWMDALKRGWLLNHLADLVERDCVYLASLESLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDG-EHFCFTRHEPVGVCCQIIPWNFPLVMQSWKLALALAMGNTVVTKVA 205          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: ABDH_SALPA (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi A GN=ydcW PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 48/168 (28.57%), Postives = 74/168 (44.05%), Query Frame = 1
Query:  160 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G  V+G+    G   S  NPA  + I  + EAS    +  ++A       W +     R E + ++ D++ +      RL S   GK L   I  E+  ++D+  F  G +R L+G         H  +   +P+GVV  I  +N+P  +  W    AL  GNCVV K
Sbjct:    9 GVLVDGE----GERQSVYNPATGEVILEIAEASPAQIDAAVQAAVNTFAEWGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHCVINDEIPAIVDVFRFFAGAARCLSGLAAGEYLEGHTSMIRRDPIGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIK 172          
The following BLAST results are available for this feature:
BLAST of FC930619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
AL1A2_MOUSE4.553e-1227.75Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A1_RAT4.553e-1227.75Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_HORSE4.553e-1227.75Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_BOVIN4.553e-1227.75Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
YF19_SCHPO5.947e-1225.29Putative aldehyde dehydrogenase-like protein C9E9.... [more]
SSDH_PANTR5.947e-1227.54Succinate-semialdehyde dehydrogenase, mitochondria... [more]
GAPN_STREI5.947e-1226.32NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
ASTD_CHRVO5.947e-1228.92N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
AL1B1_BOVIN5.947e-1228.02Aldehyde dehydrogenase X, mitochondrial (Fragment)... [more]
ABDH_SALPA5.947e-1228.57Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionC34009E03EF PostHarvC1 Citrus clementina cDNA clone C34009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930619 ID=FC930619; Name=FC930619; organism=Citrus clementina; type=EST; length=707bp
GATTCCAACACACTTTCATGTGACATTGTCTTACATAACTAATCTTTTTT
CAATCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAAAGATGG
AATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGATCGGCTTAAGTCCA
GAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGGCACATGGTCCTAC
TGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATTGCTACTGTTGTGG
AGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGCTTGCAGCGAAGCA
TCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAGGGGAGGTTGTTAG
ACAAATAGGTGATGCATTGAGAGAAAAACTGCATCATCTCGGCCGTCTTC
TTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAATTGGGGAAGTCCAA
GAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAAGCCGGCAACTTAA
TGGATCAGTAATACCTTCAGAACGTCCCAATCATATGATGTTAGAGACAT
GGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATTTAACTTCCCGTGT
GCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCTGCGGCAACTGTGT
TGTTTGGAAAGGTGCTCCAACACTCCTTTGATCACATAGCAATAACAAGC
TGGTGTC
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