FC930619

Overview
NameFC930619
Unique NameFC930619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14856 contig Ccv1_Contig14856:51..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ECO5E (Betaine aldehyde dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=betB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L GS IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPSLEGSQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ECO57 (Betaine aldehyde dehydrogenase OS=Escherichia coli O157:H7 GN=betB PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L GS IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPSLEGSQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ECO24 (Betaine aldehyde dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=betB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L GS IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPSLEGSQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ACIAD (Betaine aldehyde dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 52/168 (30.95%), Postives = 89/168 (52.98%), Query Frame = 1 
Query:  166 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +++G++     G T  SINPA  + IAT+ +AS  D E  +K+ +E  K+W    A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL+  + G  +P  R +        PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   10 YIHGQYTDATSGKTFDSINPATGEVIATIQQASQTDIEAAVKSAAEGQKVWAAKTAVERSRILRRAVDILRERNDELAQLETLDTGKAFSETSTVDIVTGADVLEYYAGLATAIQGEQVPL-RESSFFYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_SHIF8 (Betaine aldehyde dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=betB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L GS IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ECOSM (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=betB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L GS IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ECOL6 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6 GN=betB PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L GS IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ECOHS (Betaine aldehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L GS IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ECO55 (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=betB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L GS IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
[Close]
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ECO45 (Betaine aldehyde dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 53/157 (33.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L GS IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176
The following BLAST results are available for this feature:
BLAST of FC930619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
BETB_ECO5E3.256e-1833.76Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO573.256e-1833.76Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO243.256e-1833.76Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ACIAD3.256e-1830.95Betaine aldehyde dehydrogenase OS=Acinetobacter sp... [more]
BETB_SHIF84.252e-1833.76Betaine aldehyde dehydrogenase OS=Shigella flexner... [more]
BETB_ECOSM4.252e-1833.76Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOL64.252e-1833.76Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOHS4.252e-1833.76Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO554.252e-1833.76Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO454.252e-1833.76Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC34009E03EF PostHarvC1 Citrus clementina cDNA clone C34009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930619 ID=FC930619; Name=FC930619; organism=Citrus clementina; type=EST; length=707bp
GATTCCAACACACTTTCATGTGACATTGTCTTACATAACTAATCTTTTTT
CAATCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAAAGATGG
AATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGATCGGCTTAAGTCCA
GAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGGCACATGGTCCTAC
TGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATTGCTACTGTTGTGG
AGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGCTTGCAGCGAAGCA
TCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAGGGGAGGTTGTTAG
ACAAATAGGTGATGCATTGAGAGAAAAACTGCATCATCTCGGCCGTCTTC
TTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAATTGGGGAAGTCCAA
GAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAAGCCGGCAACTTAA
TGGATCAGTAATACCTTCAGAACGTCCCAATCATATGATGTTAGAGACAT
GGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATTTAACTTCCCGTGT
GCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCTGCGGCAACTGTGT
TGTTTGGAAAGGTGCTCCAACACTCCTTTGATCACATAGCAATAACAAGC
TGGTGTC
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