FC930619

Overview
NameFC930619
Unique NameFC930619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: GAPN_MAIZE (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Zea mays GN=GPN1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 46/174 (26.44%), Postives = 75/174 (43.10%), Query Frame = 1
Query:  166 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFA-------VGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            + +G+W+  A G +V+ +NP   +    V   + E+  + M A   A K W   P  KR +V+ +    L+E    +   L  E+ K   + + EV    D+  +        +G  + +     P    N   L +  PLGVV  I  FN+P  + G     AL+ GN +V K
Sbjct:   21 YADGEWRTSASGKSVAIVNPTTRKTQYRVQACTQEEVNKAMDAAKVAQKAWARTPLWKRADVLHKAAAILKEHKAPIAECLVKEIAKPAKDAVSEVVRSGDLVSYTAEEGVRILGEGKLVVSDSFPGNERNKYCLSSKIPLGVVLAIPPFNYPANLAGSKIGPALIAGNALVLK 194          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: FTHFD_RAT (10-formyltetrahydrofolate dehydrogenase OS=Rattus norvegicus GN=Aldh1l1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 47/175 (26.86%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  166 FVNGKW-KAHGP-TVSSINPANNQKIATVVEASLEDYEEGMKACSEASK--IWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIP--SERPN-HMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+ G++  A G  T ++INP +   I  V  A + D ++ + A  EA +  +W ++ A  RG ++ ++ D + +    L  + +++ G +    +   V   I    +  G   ++ G+ IP    RPN ++ L    P+GV G++  +N+P  +L W     L  GN VV K A
Sbjct:  425 FIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDRGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPA 599          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_RHIEC (Betaine aldehyde dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 49/169 (28.99%), Postives = 81/169 (47.93%), Query Frame = 1
Query:  166 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGI-GEVQEVIDMCDFAVGLSRQ-LNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            F+NG++     G  + S+ PA  + IA +  A+    E+ + A   A   W  +    RG ++++  D +RE+   L  L +++ GK + E I  +     D  +F  G++   LNGS IP  +          PLGV   I A+N+P  +  W    AL+ GN +V+K
Sbjct:   10 FINGEYVEDTDGTVIESLYPATGEVIARLHAATPAIVEKAIAAAKRAQPEWAAMSPMARGRILKRAADIMRERNRELSELETLDTGKPIQETIVADPTSGADAFEFFGGVAPAGLNGSHIPLGQDFAYTKRV--PLGVCVGIGAWNYPQQIACWKGAPALISGNAMVFK 176          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BRUSU (Betaine aldehyde dehydrogenase OS=Brucella suis GN=betB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 47/168 (27.98%), Postives = 76/168 (45.24%), Query Frame = 1
Query:  160 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G FV  K    G  +  I PA +++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATDEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BRUC2 (Betaine aldehyde dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=betB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 47/168 (27.98%), Postives = 76/168 (45.24%), Query Frame = 1
Query:  160 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G FV  K    G  +  I PA +++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATDEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 47/177 (26.55%), Postives = 78/177 (44.07%), Query Frame = 1
Query:  166 FVNGKWKA--HGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI-----WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGS-----VIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            F++G+W+       +  INP+N + I  +   S ED E  + A   A K      W       R   +R I   + E+  H  +L +I+ GK   E + ++ +V    ++  G +  ++        +P ER    +L    P+GVVG+IT +N+P  +  W    AL  G   V K
Sbjct:   11 FIDGEWREPIKKNRIPIINPSNEEIIGDIPAGSSEDIEVAVAAARRALKRNKGREWAATSGAHRARYLRAIAAKVTERKDHFVKLETIDSGKPFDEAVLDIDDVATCFEYFAGQAEAMDAKQKAPVTLPMERFKSHVLR--QPIGVVGLITPWNYPLLMATWKIAPALAAGCTAVLK 185          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: ASTD_COLP3 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=astD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 48/174 (27.59%), Postives = 79/174 (45.40%), Query Frame = 1
Query:  142 LSPETPGCFVNGKWKAH-GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +S   P  F+NG+W+A  G  VSS NPA N+ I     AS +   + + +  +A + W  +    R  VV +  + L E    L   +++E GK   E  GE   ++     ++    +  G+V  +  P         P GVV +   +NFP  +   +   AL+ GN +V+K
Sbjct:    1 MSHANPVQFINGQWQAGLGHDVSSSNPARNEVIWQGKTASKDQVNDAVLSARQAFESWANISLEARVAVVTKFAELLAENKDALATTIALETGKPKWETTGEAGAMVAKVAISLKAYNERTGTV-ENPMPGAKAFIRHKPHGVVAIFGPYNFPGHLPNGHIVPALIAGNTIVFK 173          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 48/173 (27.75%), Postives = 79/173 (45.66%), Query Frame = 1
Query:  166 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+N +W    +G     INPA  + I  V E    D ++ +KA  +A +I   W  + A +RG ++ ++ D +      L  + S+  GKI     + + +  I    +  G + +++G  IPS+           P+GV G I  +N P  +  W    AL CGN V+ K A
Sbjct:   24 FINNEWHNSLNGKKFPVINPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGCLLNKLADLMERDRVLLATMESMNAGKIFTHAYLLDTEVSIKALKYFAGWADKIHGQTIPSDGDVFTYTRR-EPIGVCGQIIPWNGPLILFIWKIGAALSCGNTVIVKPA 195          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: ROCA_BACWK (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 43/158 (27.22%), Postives = 74/158 (46.84%), Query Frame = 1
Query:  202 VSSINPANNQK-IATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPT 672
            + S+NPAN ++ +  V +AS E  E+ M+      + W +     R +++ +    +R + H    +L  E GK   E   +  E ID  ++      +L   +    RP      ++ PLGV  +I+ +NFP A++      A+V GN V+ K A T
Sbjct:   52 IVSVNPANKEELVGRVSKASRELAEKAMQVADATFQTWRKSKPEMRADILFRAAAIVRRRKHEFSAILVKEAGKPWNEADADTAEAIDFMEYYARQMLKLKDGMPVESRPIEYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAAVVSGNTVLLKPAST 209          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 48/175 (27.43%), Postives = 79/175 (45.14%), Query Frame = 1
Query:  166 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI--WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIP--SERPNHMMLETWN-PLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+NG++     G +  +INP +   I  V  A + D +  + A  EA +   W ++    RG ++ ++ D + E    L  + SI+ G +    +   V   I    +  G   ++ G  IP    RPN  +  T   P+GV G++  +N+P  +L W     L  GN VV K A
Sbjct:  425 FINGQFMDAEGGKSYDTINPTDGTAICKVSLAQISDIDRAVAAAKEAFENGEWGKMNPRDRGRLLYRLADLMEEHQEELATIESIDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGRTIPINQARPNRNLTFTRREPIGVCGIVIPWNYPLMMLAWKTAACLTAGNTVVLKPA 599          
The following BLAST results are available for this feature:
BLAST of FC930619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
GAPN_MAIZE6.575e-1126.44NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
FTHFD_RAT6.575e-1126.8610-formyltetrahydrofolate dehydrogenase OS=Rattus ... [more]
BETB_RHIEC6.575e-1128.99Betaine aldehyde dehydrogenase OS=Rhizobium etli (... [more]
BETB_BRUSU6.575e-1127.98Betaine aldehyde dehydrogenase OS=Brucella suis GN... [more]
BETB_BRUC26.575e-1127.98Betaine aldehyde dehydrogenase OS=Brucella canis (... [more]
BADH_BETVU6.575e-1126.55Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
ASTD_COLP36.575e-1127.59N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
AL1A7_RAT6.575e-1127.75Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
ROCA_BACWK8.587e-1127.221-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
FTHFD_XENLA8.587e-1127.4310-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionC34009E03EF PostHarvC1 Citrus clementina cDNA clone C34009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930619 ID=FC930619; Name=FC930619; organism=Citrus clementina; type=EST; length=707bp
GATTCCAACACACTTTCATGTGACATTGTCTTACATAACTAATCTTTTTT
CAATCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAAAGATGG
AATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGATCGGCTTAAGTCCA
GAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGGCACATGGTCCTAC
TGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATTGCTACTGTTGTGG
AGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGCTTGCAGCGAAGCA
TCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAGGGGAGGTTGTTAG
ACAAATAGGTGATGCATTGAGAGAAAAACTGCATCATCTCGGCCGTCTTC
TTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAATTGGGGAAGTCCAA
GAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAAGCCGGCAACTTAA
TGGATCAGTAATACCTTCAGAACGTCCCAATCATATGATGTTAGAGACAT
GGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATTTAACTTCCCGTGT
GCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCTGCGGCAACTGTGT
TGTTTGGAAAGGTGCTCCAACACTCCTTTGATCACATAGCAATAACAAGC
TGGTGTC
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