FC930619

Overview
NameFC930619
Unique NameFC930619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14856 contig Ccv1_Contig14856:51..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BRUO2 (Betaine aldehyde dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 1
Query:  160 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BRUME (Betaine aldehyde dehydrogenase OS=Brucella melitensis GN=betB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 1
Query:  160 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BRUMB (Betaine aldehyde dehydrogenase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 1
Query:  160 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BRUAB (Betaine aldehyde dehydrogenase OS=Brucella abortus GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 1
Query:  160 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BRUA2 (Betaine aldehyde dehydrogenase OS=Brucella abortus (strain 2308) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 1
Query:  160 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BRUA1 (Betaine aldehyde dehydrogenase OS=Brucella abortus (strain S19) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 1
Query:  160 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 45/173 (26.01%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  166 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK-ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+N +W       T  ++NP+  + I  V E + ED ++ +KA   A ++   W  + A  RG ++ ++ D +     +L  L +++ GK  +   + ++  V+    +  G + + +G  IP +  +        P+GV G I  +NFP  +  W    AL  GN VV K A
Sbjct:   42 FINNEWHDAVSKKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAAQAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDG-DFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVA 213          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 45/173 (26.01%), Postives = 80/173 (46.24%), Query Frame = 1
Query:  166 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK-ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+N +W       T  ++NP+  + I  V E   ED ++ +KA   A ++   W  + A  RG ++ ++ D +     +L  L +++ GK  +   + ++  V+    +  G + + +G  IP +  +        P+GV G I  +NFP  +  W    AL  GN VV K A
Sbjct:   40 FINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDG-DFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVA 211          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: ALDH2_LEITA (Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 48/169 (28.40%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  169 VNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            +NGK+     G T   +NPA+ + IA V EA   D +  +KA   A + +       R  ++ ++ D L +    +  L S++ GK     +  +V   ++   +  GL+ ++NG+V P    N + +    P+GV G I  +NFP  +  +    AL  GN VV K A
Sbjct:   24 INGKFVPAVSGKTFEVVNPADEKVIANVAEAEKADVDLAVKAARHAFESFRMTDCQWRRNLMLRLADILEKNSKEMAALESLDNGKPYEVALNVDVALSVECFRYCAGLADKVNGTV-PPRSGNFLGIVKRQPIGVCGQIIPWNFPLLMAAFKLSPALAMGNTVVLKPA 191          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 45/173 (26.01%), Postives = 80/173 (46.24%), Query Frame = 1
Query:  166 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK-ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            F+N +W       T  ++NP+  + I  V E   ED ++ +KA   A ++   W  + A  RG ++ ++ D +     +L  L +++ GK  +   + ++  V+    +  G + + +G  IP +  +        P+GV G I  +NFP  +  W    AL  GN VV K A
Sbjct:   40 FINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDG-DFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVA 211          
The following BLAST results are available for this feature:
BLAST of FC930619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
BETB_BRUO28.587e-1127.98Betaine aldehyde dehydrogenase OS=Brucella ovis (s... [more]
BETB_BRUME8.587e-1127.98Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
BETB_BRUMB8.587e-1127.98Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
BETB_BRUAB8.587e-1127.98Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
BETB_BRUA28.587e-1127.98Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
BETB_BRUA18.587e-1127.98Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
ALDH2_RAT8.587e-1126.01Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
ALDH2_PONAB8.587e-1126.01Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH2_LEITA8.587e-1128.40Aldehyde dehydrogenase, mitochondrial OS=Leishmani... [more]
ALDH2_HUMAN8.587e-1126.01Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009E03EF PostHarvC1 Citrus clementina cDNA clone C34009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930619 ID=FC930619; Name=FC930619; organism=Citrus clementina; type=EST; length=707bp
GATTCCAACACACTTTCATGTGACATTGTCTTACATAACTAATCTTTTTT
CAATCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAAAGATGG
AATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGATCGGCTTAAGTCCA
GAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGGCACATGGTCCTAC
TGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATTGCTACTGTTGTGG
AGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGCTTGCAGCGAAGCA
TCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAGGGGAGGTTGTTAG
ACAAATAGGTGATGCATTGAGAGAAAAACTGCATCATCTCGGCCGTCTTC
TTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAATTGGGGAAGTCCAA
GAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAAGCCGGCAACTTAA
TGGATCAGTAATACCTTCAGAACGTCCCAATCATATGATGTTAGAGACAT
GGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATTTAACTTCCCGTGT
GCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCTGCGGCAACTGTGT
TGTTTGGAAAGGTGCTCCAACACTCCTTTGATCACATAGCAATAACAAGC
TGGTGTC
back to top