FC930619

Overview
NameFC930619
Unique NameFC930619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14856 contig Ccv1_Contig14856:51..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: IOLA1_GEOKA (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Geobacillus kaustophilus GN=iolA1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  166 FVNGKWKAHG--PTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNG---SVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            ++ G+W A     T+   NPA  + +A V  ++ ED ++ ++A  +A   W ++P PKR  ++      L +    L  L+  E GK   E  GE+Q  I+  +FA G    L G   S I  E  + M      PLGVV  IT FNFP  V  W   +A+VCGN  V K
Sbjct:   14 YIGGQWVASSGTETLEVPNPATGEVLARVPISTKEDVDQAVQAAKKAFATWKDVPVPKRARIMFSFHHLLNQHHEELAELVVQENGKAYKEAYGEIQRGIECVEFAAGAPTLLMGESLSNIAEEIDSEMFR---YPLGVVAGITPFNFPMMVPLWMFPLAIVCGNTFVLK 180          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_ECO27 (Betaine aldehyde dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +INPAN   +ATV  A  ED +  +K+  +  KIW  + A +R  ++R+  D LRE+   L +L +++ GK   E    ++    D+ ++  GL   L G  IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGCQIPL-RETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: IOLA1_BACWK (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Bacillus weihenstephanensis (strain KBAB4) GN=iolA1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 54/167 (32.34%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  169 VNGKW-KAHGPTVSSI-NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWN-PLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +NG+W ++ G  V ++ NPA  + IA V  +  ED E+ ++A   A K W ++P P R   + +    L+E    L +++++E GK L +  GEVQ  I+  + A      + G  +P+   + +    W  P+GVV  IT FNFP  +  W   +A+ CGN  V K
Sbjct:   13 INGEWVESTGTEVEAVPNPATGKIIAYVPLSPKEDVEKAVEAAKAAYKTWSKVPVPNRSRQLYKYLQLLQENKEELAKIITLENGKTLTDATGEVQRGIEAVELATSAPNLMMGQALPN-IASGIDGSIWRYPIGVVAGITPFNFPMMIPLWMFPLAIACGNTFVLK 178          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 54/169 (31.95%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  166 FVNGKW-KAHGPTVSSI-NPANNQKIATVVEASLEDYEEGMKACSEA--SKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            F++G+W  A    + SI NP N ++IATV E   ED  + + A   A     W  L   +RG++V +I + +R  L  L  L S++ GK L E   ++ ++ ++  +  GL+ +  G +I S  P+        P+GV G IT +N+P     W    AL  GN +V K
Sbjct:    6 FIDGEWISAEKEQIRSIINPFNQEEIATVSEGGREDAIKAIAAARRAFDKGEWSSLSGLERGKIVLKIAELIRRDLEELAELESLDTGKTLEESKADMDDIANVFQYYAGLADKDGGEIISSPIPDSESKIIREPIGVCGQITPWNYPLLQASWKIAPALAAGNTIVMK 174          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: IOLA_BACCN (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=iolA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  169 VNGKW-KAHGPTVSSI-NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWN-PLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +NG+W ++ G  V ++ NPA  + IA V  +  ED E  ++A   A + W ++P P R  ++ +    L+E    L +++++E GK L +  GEVQ  I+  + A      + G  +P+     +    W  PLGVV  IT FNFP  +  W   +A+ CGN  V K
Sbjct:   13 INGEWVESTGTEVEAVPNPATGKIIAYVPLSPKEDVERAVEAAKNAYETWSKVPVPNRSRMLYKYLQLLQENKDELSKIITLENGKTLKDASGEVQRGIEAVELATSAPNLMMGQALPN-IAGGIDGSIWRYPLGVVAGITPFNFPMMIPLWMFPLAIACGNTFVLK 178          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: IOLA2_BACCZ (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus cereus (strain ZK / E33L) GN=iolA2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 55/174 (31.61%), Postives = 82/174 (47.13%), Query Frame = 1
Query:  145 SPETPGCFVNGKWKAHGPTVSSI--NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +P+    ++ G+W     T      NPA  + IA V  ++  D E+ + A +EA K W +   PKR  ++ +    L +    L +L++IE GK   E  GEV   I+  +FA G    + G  +P             P+GV+G IT FNFP  V  W   +A+ CGN  V K
Sbjct:    6 APQIVKNYIGGEWVESISTKMEAVYNPATGEVIAQVPLSTKVDVEQAVSAANEAFKSWSKTAVPKRARILFKYQQLLVDNWEELAKLITIENGKSYNEAYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIESGMYRYPIGVIGGITPFNFPMMVPCWMFPLAIACGNTFVLK 179          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_SERP5 (Betaine aldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  166 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            ++NG +     G T +++NPAN + +A +  AS ED    + + +   K+W  + A  R  ++R+  D LRE+   L  L +++ GK + E    ++    D+ ++  GL   + G  IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   10 YINGAYVDSTDGKTFNAVNPANGEVLAEIQSASAEDVNRAVASAASGQKVWAAMTAMARSRILRRAVDILRERNDELAALETLDTGKAMSETTAVDIVTGADVLEYYAGLIPSIEGQQIPL-RDTSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: IOLA_BACCQ (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain Q1) GN=iolA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  169 VNGKW-KAHGPTVSSI-NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWN-PLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +NG+W ++ G  V ++ NPA  + IA V  +  ED E+ ++A   A + W ++P P R   + +    L+E    L +++++E GK L +  GEVQ  I+  + A      + G  +P+   + +    W  P+GVV  IT FNFP  +  W   +A+ CGN  V K
Sbjct:   13 INGEWVESTGTEVEAVPNPATGKIIAYVPLSPKEDVEKAVEAAKAAYETWSKVPVPNRSRQLYKYLQLLQENKEELAKIITLENGKTLTDATGEVQRGIEAVELATSTPNLMMGQALPN-IASGIDGSIWRYPIGVVAGITPFNFPMMIPLWMFPLAIACGNTFVLK 178          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: IOLA_BACC7 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain AH187) GN=iolA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  169 VNGKW-KAHGPTVSSI-NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWN-PLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +NG+W ++ G  V ++ NPA  + IA V  +  ED E+ ++A   A + W ++P P R   + +    L+E    L +++++E GK L +  GEVQ  I+  + A      + G  +P+   + +    W  P+GVV  IT FNFP  +  W   +A+ CGN  V K
Sbjct:   13 INGEWVESTGTEVEAVPNPATGKIIAYVPLSPKEDVEKAVEAAKAAYETWSKVPVPNRSRQLYKYLQLLQENKEELAKIITLENGKTLTDATGEVQRGIEAVELATSTPNLMMGQALPN-IASGIDGSIWRYPIGVVAGITPFNFPMMIPLWMFPLAIACGNTFVLK 178          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: IOLA_BACC1 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain ATCC 10987) GN=iolA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  169 VNGKW-KAHGPTVSSI-NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWN-PLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +NG+W ++ G  V ++ NPA  + IA V  +  ED E+ ++A   A + W ++P P R   + +    L+E    L +++++E GK L +  GEVQ  I+  + A      + G  +P+   + +    W  P+GVV  IT FNFP  +  W   +A+ CGN  V K
Sbjct:   13 INGEWVESTGTEVEAVPNPATGKIIAYVPLSPKEDVEKAVEAAKAAYETWSKVPVPNRSRQLYKYLQLLQENKEELAKIITLENGKTLTDATGEVQRGIEAVELATSTPNLMMGQALPN-IASGIDGSIWRYPIGVVAGITPFNFPMMIPLWMFPLAIACGNTFVLK 178          
The following BLAST results are available for this feature:
BLAST of FC930619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
IOLA1_GEOKA1.616e-1734.12Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_ECO271.616e-1733.12Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
IOLA1_BACWK2.110e-1732.34Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_BACSU2.756e-1731.95Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
IOLA_BACCN3.599e-1732.34Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA2_BACCZ4.701e-1731.61Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_SERP54.701e-1729.17Betaine aldehyde dehydrogenase OS=Serratia proteam... [more]
IOLA_BACCQ6.140e-1731.74Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_BACC76.140e-1731.74Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_BACC16.140e-1731.74Methylmalonate semialdehyde dehydrogenase [acylati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009E03EF PostHarvC1 Citrus clementina cDNA clone C34009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930619 ID=FC930619; Name=FC930619; organism=Citrus clementina; type=EST; length=707bp
GATTCCAACACACTTTCATGTGACATTGTCTTACATAACTAATCTTTTTT
CAATCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAAAGATGG
AATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGATCGGCTTAAGTCCA
GAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGGCACATGGTCCTAC
TGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATTGCTACTGTTGTGG
AGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGCTTGCAGCGAAGCA
TCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAGGGGAGGTTGTTAG
ACAAATAGGTGATGCATTGAGAGAAAAACTGCATCATCTCGGCCGTCTTC
TTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAATTGGGGAAGTCCAA
GAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAAGCCGGCAACTTAA
TGGATCAGTAATACCTTCAGAACGTCCCAATCATATGATGTTAGAGACAT
GGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATTTAACTTCCCGTGT
GCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCTGCGGCAACTGTGT
TGTTTGGAAAGGTGCTCCAACACTCCTTTGATCACATAGCAATAACAAGC
TGGTGTC
back to top