FC930619

Overview
NameFC930619
Unique NameFC930619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14856 contig Ccv1_Contig14856:51..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_PSEU2 (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=betB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  199 TVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            T  +INPAN + +A +  A  +D E  + A  +  KIW  + A +R  ++R+  D LRE+   L  L +++ GK + E    ++    D+ ++  GL   + G  IP  R +  +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   23 TFDAINPANGEVLAQIQRAGKDDVERAVVAAEKGQKIWAAMTAVERSRILRRAVDILRERNDELAALETLDTGKAISETRYVDIVTGADVLEYYAGLVPAIEGEQIPL-RDSSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 51/168 (30.36%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  166 FVNGKWKAHGP--TVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            +++G +   G   T  +INPAN + +A V  A+ ED E  + +  +  KIW  + A +R  ++R+  D LRE+   L  L +++ GK   E    ++    D+ ++  GL   + G  IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   10 YIDGAYSDAGSDATFEAINPANGEVLAHVQRATKEDVERAVVSAEKGQKIWAAMTAMERSRILRRAVDILRERNDELAALETLDTGKAFSETKYVDIVTGADVLEYYAGLVPAIEGEQIPL-RDTSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: ABDH_PECCP (Gamma-aminobutyraldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=PC1_1415 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 53/168 (31.55%), Postives = 77/168 (45.83%), Query Frame = 1
Query:  169 VNGKWKA-HGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            + GK  A  G  ++  NPA  ++IA + +A L   +  + A   A   W +     R  ++ QI DA+ E      RL S+  GK     +  EV  V D+  F  G +R L+GS        H  +   +P+GVV  I  +N+P  +  W    AL  GNCVV K A
Sbjct:    7 IEGKLVAGKGEALAVFNPATGEQIAAIAQADLHQVDAAVLAAESAFAHWGQTTPKTRATLLLQIADAIEENAEAFARLESLNCGKPYHAALNDEVPAVADVFRFFAGAARCLSGSAAGEYLEGHTSMIRRDPVGVVASIAPWNYPLMMASWKLAPALAAGNCVVLKPA 174          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 53/166 (31.93%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  169 VNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            + GKW       T+   NPA  + IA V     ++  + + +  EA   W  L A +R +V+R+  D L      LG+L+++E GK L E IGEV       ++    ++++ G +IP    +  +L    P+GVVG IT +NFP A++      AL  G  VV K
Sbjct:   57 IGGKWLDSYDNKTIKVNNPATGEIIADVACMGTKETNDAIASSYEAFTSWSRLTAGERSKVLRRWYDLLIAHKEELGQLITLEQGKPLKEAIGEVAYGASFIEYYAEEAKRVYGDIIPPNLSDRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPALASGCTVVVK 222          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: SSDH1_SCHPO (Putative succinate-semialdehyde dehydrogenase C1002.12c [NADP+] OS=Schizosaccharomyces pombe GN=SPAC1002.12c PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  166 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            ++ GKW   A G T    NP  N+ +A V + S+E+  + +K   EA   +      +R  ++R+  D + E    L  ++++E GK L +  GEV       D+  G + +++G    S  P + ++    P+GVVG+IT +NFP A++      AL  G  VV + A
Sbjct:   27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKERYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSSMSSNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPA 195          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: GABD_ECOLI (Succinate-semialdehyde dehydrogenase [NADP+] OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 47/168 (27.98%), Postives = 81/168 (48.21%), Query Frame = 1
Query:  169 VNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGA 666
            +NG+W    +G  +   NPAN  K+ +V +   ++    + A + A   W  L A +R  ++R   + + E    L RL+++E GK L E  GE+       ++     +++ G  IP  + +  ++    P+GV   IT +NFP A++   A  AL  G  +V K A
Sbjct:   15 INGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPA 182          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_YERP3 (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 49/168 (29.17%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  166 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            ++NG +   A G T  ++NPAN + IA +  A+ +D ++ + A  +   +W  + A +R  ++R+  D LR++   L  + + + GK L E    ++    D+ ++  GL   L G  IP  R +  +     PLGVV  I A+N+P  +  W +  AL  GN +++K
Sbjct:   10 YINGAYTDSASGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQGQPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPL-RGSAFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFK 176          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: BETB_BURXL (Betaine aldehyde dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=betB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 47/157 (29.94%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  193 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G T  +++PA  + +A+V +AS  D E  +++  E  + W  L A +R  V+R+  + LRE+   L  L + + GK + E +  ++    D+ ++  GL+  + G  IP  RP   +     PLGV   I A+N+P  +  W +  AL  GN +++K
Sbjct:   21 GETFDTLDPATGETLASVQQASAADVERAVQSAREGQREWAALTAMQRSRVLRRAVEILRERNDELAALETRDTGKPIAETLAVDIATGADVIEYYAGLATAIEGQQIPL-RPTSFVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFK 176          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: IOLA_BACA2 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus amyloliquefaciens (strain FZB42) GN=iolA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 50/167 (29.94%), Postives = 80/167 (47.90%), Query Frame = 1
Query:  166 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            ++NG+W           INPA  + +  V  ++ ED E  +++ SEA + W +   P+R  ++      L++    L RL+++E GK   E +GEV   I+  +FA G    + G  + S   +        P+GVVG I  FNFP  V  W   +A+  GN  + K
Sbjct:   10 YINGEWVESKTDQYEDVINPATKEVMCQVPISTREDVEYAVRSASEAFQTWSKTAVPRRARILFNYQQLLQQNKEELARLITLENGKNTTEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAISLGNTFILK 176          
BLAST of FC930619 vs. ExPASy Swiss-Prot
Match: XYLC_PSEPU (Benzaldehyde dehydrogenase [NAD+] OS=Pseudomonas putida GN=xylC PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  160 GCFVNGKW-KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 660
            G   +  W +A G   + ++P+N   +     A+ ED +  + A   A K W  +P  +R  +VR+  + L+E+ +        E G I P+G+ E     +    A GL+   NG++ PS  P  M L    P+GVVGVI  +NFP  +   +   AL  GN V+ K
Sbjct:   12 GKVFSSNWVEARGGVANVVDPSNGDILGITGVANGEDVDAAVNAAKRAQKEWAAIPFSERAAIVRKAAEKLKEREYEFADWNVRECGAIRPKGLWEAGIAYEQMHQAAGLASLPNGTLFPSAVPGRMNLCQRVPVGVVGVIAPWNFPLFLAMRSVAPALALGNAVILK 179          
The following BLAST results are available for this feature:
BLAST of FC930619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
BETB_PSEU28.866e-1630.97Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]
BETB_PSEPF8.866e-1630.36Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
ABDH_PECCP8.866e-1631.55Gamma-aminobutyraldehyde dehydrogenase OS=Pectobac... [more]
SSDH_ARATH1.158e-1531.93Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH1_SCHPO1.158e-1529.59Putative succinate-semialdehyde dehydrogenase C100... [more]
GABD_ECOLI1.158e-1527.98Succinate-semialdehyde dehydrogenase [NADP+] OS=Es... [more]
BETB_YERP31.158e-1529.17Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_BURXL1.158e-1529.94Betaine aldehyde dehydrogenase OS=Burkholderia xen... [more]
IOLA_BACA21.512e-1529.94Methylmalonate semialdehyde dehydrogenase [acylati... [more]
XYLC_PSEPU1.975e-1530.36Benzaldehyde dehydrogenase [NAD+] OS=Pseudomonas p... [more]

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Properties
Property NameValue
Genbank descriptionC34009E03EF PostHarvC1 Citrus clementina cDNA clone C34009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930619 ID=FC930619; Name=FC930619; organism=Citrus clementina; type=EST; length=707bp
GATTCCAACACACTTTCATGTGACATTGTCTTACATAACTAATCTTTTTT
CAATCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAAAGATGG
AATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGATCGGCTTAAGTCCA
GAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGGCACATGGTCCTAC
TGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATTGCTACTGTTGTGG
AGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGCTTGCAGCGAAGCA
TCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAGGGGAGGTTGTTAG
ACAAATAGGTGATGCATTGAGAGAAAAACTGCATCATCTCGGCCGTCTTC
TTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAATTGGGGAAGTCCAA
GAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAAGCCGGCAACTTAA
TGGATCAGTAATACCTTCAGAACGTCCCAATCATATGATGTTAGAGACAT
GGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATTTAACTTCCCGTGT
GCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCTGCGGCAACTGTGT
TGTTTGGAAAGGTGCTCCAACACTCCTTTGATCACATAGCAATAACAAGC
TGGTGTC
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