FC930625

Overview
NameFC930625
Unique NameFC930625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.125e-41
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID +PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 81/85 (95.29%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 81/85 (95.29%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.386e-40
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ IDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.386e-40
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ IDG+ IKLQIWDTAGQESFRSITRSYYRGAAGALLVYD
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.878e-40
Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y +LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID + IKLQIWDTAGQESFRSITRSYYRG+AGALLVYD
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYD 86
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y+Y+FKYIIIGD GVGKSCLL QFT+ +F P    TIGVEFG R+V ++ + IKLQIWDTAGQE FR++TRSYYRGAAGALLVYD
Sbjct:    5 YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYD
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYD
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            Y Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R++ + G+ IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYD
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 92
The following BLAST results are available for this feature:
BLAST of FC930625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RAB2A_MAIZE8.125e-4194.12Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_MOUSE1.061e-4095.29Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN1.061e-4095.29Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
YPTV4_VOLCA1.386e-4094.12GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE1.386e-4094.12GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2A_DICDI6.878e-4091.76Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB14_DICDI2.896e-3072.94Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB14_RAT8.427e-3071.76Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB8.427e-3071.76Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG8.427e-3071.76Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009E09EF PostHarvC1 Citrus clementina cDNA clone C34009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930625 ID=FC930625; Name=FC930625; organism=Citrus clementina; type=EST; length=718bp
GATCCATCCATCAGTGCACGCCTGCACGGGCACGGCAAGGTACTCTGTGT
CAGTAAAGAACTAAGATTGGGGCTTTAAGGAAGGAAGGCATCCAGAAGTC
TGGAGACTCTCGAAGACTCAAAGCTCTGAGGGGGAAAAAAAAAATATAAT
TATAATAATAATAAAATGAAATAGTTAGAAAAGAGACAATCAGACAAAGC
GTGTCGGTGAGGGTGAGCAAATAGGTCACGGTGTCCGCACACATTCCCTA
TTCCTCTGCTTTTTGGTAAATCGTAAGAAATCAAGTTTTCAAATATTATT
ACATTACACGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTC
TTCGTCTTTTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTG
AGTTGAGTTGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAAC
AACAACATGTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACAC
TGGAGTAGGGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTC
AGCCCGTTCATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTC
ACCATCGATGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCA
AGAATCTTTCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGG
CACTTCTGGTTTATGATA
back to top