FC930625

Overview
NameFC930625
Unique NameFC930625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB4A_ECHMU (Probable Ras-related protein Rab-4A OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            +DYLFK++IIG+ G GK+C+L ++T+++F P    TIG EFG+R++++DG  +K+QIWDTAGQE FRS+ RSYY  A G LLVYD
Sbjct:    6 FDYLFKFLIIGNAGTGKTCILRRYTERKFFPNTQHTIGAEFGSRVISVDGTHVKIQIWDTAGQERFRSMARSYYHDAVGTLLVYD 90
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            +D+ FK ++IGD+GVGKSCLLL+F D  +   H  TIGV+F  + + +DG+ IKLQIWDTAGQE FR+IT SYYRGA G +LVYD
Sbjct:    7 HDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYD 91
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R   ++G+ +KLQIWDTAGQE FR+IT SYYRGA G ++VYD
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YD L K ++IGD+GVGKSC+LL+F D RF   +  TIGV+F  R + +DG+ IKLQIWDTAGQE F++IT SYYRGA G ++VYD
Sbjct:   30 YDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYD 114
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93
The following BLAST results are available for this feature:
BLAST of FC930625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RAB4A_ECHMU3.664e-2557.65Probable Ras-related protein Rab-4A OS=Echinococcu... [more]
RAB8B_RAT6.250e-2560.00Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB6.250e-2560.00Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE6.250e-2560.00Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN6.250e-2560.00Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN6.250e-2560.00Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB1D_DICDI6.250e-2561.18Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
YPT1_SCHPO8.163e-2561.18GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1C_DICDI8.163e-2561.18Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
YPTC6_CHLRE1.066e-2463.53Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionC34009E09EF PostHarvC1 Citrus clementina cDNA clone C34009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930625 ID=FC930625; Name=FC930625; organism=Citrus clementina; type=EST; length=718bp
GATCCATCCATCAGTGCACGCCTGCACGGGCACGGCAAGGTACTCTGTGT
CAGTAAAGAACTAAGATTGGGGCTTTAAGGAAGGAAGGCATCCAGAAGTC
TGGAGACTCTCGAAGACTCAAAGCTCTGAGGGGGAAAAAAAAAATATAAT
TATAATAATAATAAAATGAAATAGTTAGAAAAGAGACAATCAGACAAAGC
GTGTCGGTGAGGGTGAGCAAATAGGTCACGGTGTCCGCACACATTCCCTA
TTCCTCTGCTTTTTGGTAAATCGTAAGAAATCAAGTTTTCAAATATTATT
ACATTACACGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTC
TTCGTCTTTTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTG
AGTTGAGTTGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAAC
AACAACATGTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACAC
TGGAGTAGGGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTC
AGCCCGTTCATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTC
ACCATCGATGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCA
AGAATCTTTCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGG
CACTTCTGGTTTATGATA
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