FC930625

Overview
NameFC930625
Unique NameFC930625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
The following BLAST results are available for this feature:
BLAST of FC930625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RB11B_RAT1.066e-2463.53Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE1.066e-2463.53Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN1.066e-2463.53Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_DISOM1.066e-2463.53Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_BOVIN1.066e-2463.53Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11A_RAT1.066e-2463.53Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT1.066e-2463.53Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB1.066e-2463.53Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG1.066e-2463.53Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE1.066e-2463.53Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]

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Properties
Property NameValue
Genbank descriptionC34009E09EF PostHarvC1 Citrus clementina cDNA clone C34009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930625 ID=FC930625; Name=FC930625; organism=Citrus clementina; type=EST; length=718bp
GATCCATCCATCAGTGCACGCCTGCACGGGCACGGCAAGGTACTCTGTGT
CAGTAAAGAACTAAGATTGGGGCTTTAAGGAAGGAAGGCATCCAGAAGTC
TGGAGACTCTCGAAGACTCAAAGCTCTGAGGGGGAAAAAAAAAATATAAT
TATAATAATAATAAAATGAAATAGTTAGAAAAGAGACAATCAGACAAAGC
GTGTCGGTGAGGGTGAGCAAATAGGTCACGGTGTCCGCACACATTCCCTA
TTCCTCTGCTTTTTGGTAAATCGTAAGAAATCAAGTTTTCAAATATTATT
ACATTACACGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTC
TTCGTCTTTTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTG
AGTTGAGTTGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAAC
AACAACATGTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACAC
TGGAGTAGGGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTC
AGCCCGTTCATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTC
ACCATCGATGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCA
AGAATCTTTCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGG
CACTTCTGGTTTATGATA
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