FC930625

Overview
NameFC930625
Unique NameFC930625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DG+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DG+ IKLQIWDTAGQE  R+IT SYYRGA G ++VYD
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + V +DG+ +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD
Sbjct:    5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
[Close]
BLAST of FC930625 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  463 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 717
            YDYLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R + +DG+ IKLQIWDTAGQE FR+IT +YYRGA G +LVYD
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
The following BLAST results are available for this feature:
BLAST of FC930625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
RB11A_HUMAN1.066e-2463.53Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK1.066e-2463.53Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA1.066e-2463.53Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN1.066e-2463.53Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAB1B_PIG1.066e-2462.35Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_YEAST1.818e-2460.00GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB8A_RAT1.818e-2458.82Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_PONAB1.818e-2458.82Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE1.818e-2458.82Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA1.818e-2458.82Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionC34009E09EF PostHarvC1 Citrus clementina cDNA clone C34009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930625 ID=FC930625; Name=FC930625; organism=Citrus clementina; type=EST; length=718bp
GATCCATCCATCAGTGCACGCCTGCACGGGCACGGCAAGGTACTCTGTGT
CAGTAAAGAACTAAGATTGGGGCTTTAAGGAAGGAAGGCATCCAGAAGTC
TGGAGACTCTCGAAGACTCAAAGCTCTGAGGGGGAAAAAAAAAATATAAT
TATAATAATAATAAAATGAAATAGTTAGAAAAGAGACAATCAGACAAAGC
GTGTCGGTGAGGGTGAGCAAATAGGTCACGGTGTCCGCACACATTCCCTA
TTCCTCTGCTTTTTGGTAAATCGTAAGAAATCAAGTTTTCAAATATTATT
ACATTACACGACGTATAATAAGCATATCAGCAGCAGGCAGCGGCGTCTTC
TTCGTCTTTTATTGTTGTTGAGTTGAGTTGAGTTGAGTTGAGTTGAGTTG
AGTTGAGTTGAGTTGAGAGACAGAGTTCATCTAAAAGAAACAACAGCAAC
AACAACATGTCGTACGATTATCTGTTCAAGTACATAATCATCGGAGACAC
TGGAGTAGGGAAATCATGCTTGCTATTGCAATTCACGGACAAGAGGTTTC
AGCCCGTTCATGATTTGACCATCGGCGTTGAATTCGGTGCTCGCATGGTC
ACCATCGATGGTCGCCCCATCAAGCTCCAGATTTGGGACACCGCTGGCCA
AGAATCTTTCAGATCTATCACAAGATCTTATTACAGAGGAGCGGCTGGGG
CACTTCTGGTTTATGATA
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