FC930630

Overview
NameFC930630
Unique NameFC930630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 75/179 (41.90%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  147 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYR 174          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 75/179 (41.90%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  147 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYR 174          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 75/179 (41.90%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  147 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYR 174          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 75/183 (40.98%), Postives = 102/183 (55.74%), Query Frame = 3
Query:  150 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYK 665
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQ 179          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 83/184 (45.11%), Postives = 104/184 (56.52%), Query Frame = 3
Query:  150 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPT---LVPLLGIDVWEHAYYLQYK 665
            TLP+L Y Y ALEP      M++HH KHHQAYV N N A+E L         Q L K+      +L  AI+ N GGH+NHS+FWK+L       G     +L  AI   FGS+EA   +     A   GSGW WL L  E  +L V +TANQD P++ KA       PLLG+DVWEHAYYL+++
Sbjct:    4 TLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLT-AIRNNVGGHLNHSLFWKSLKK-----GTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVLQ-ENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYYLKFQ 180          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 75/183 (40.98%), Postives = 102/183 (55.74%), Query Frame = 3
Query:  150 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYK 665
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQ 179          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.409e-29
Identity = 72/180 (40.00%), Postives = 102/180 (56.67%), Query Frame = 3
Query:  147 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++  +  NGGGH+NH++FW+ L+P      +     +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQTLINNGGGHLNHALFWELLSPEK----QDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYR 174          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 74/183 (40.44%), Postives = 102/183 (55.74%), Query Frame = 3
Query:  150 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYK 665
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P++G+DVWEHAYYL+++
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQ 179          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.139e-29
Identity = 72/178 (40.45%), Postives = 103/178 (57.87%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--FQALNKVDTSTVV-----QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            L  LPY Y ALEP I    MQLHH KHH AYV N N A+E+    Q+++  D  T +      ++  ++ N GGHVNH++FW+ +      G   P  ++  AI+  FGS +A  Q+ +  G    GSGWVWL + ++   L + +T NQD  + +  T  P++G DVWEHAYYL+Y+
Sbjct:    5 LKPLPYAYDALEPYIDATTMQLHHDKHHAAYVNNLNAAIEKYSDLQSMSVEDLVTHLDRVPEDVRTTVRNNAGGHVNHTMFWEIMG---ANGSGAPTGAISEAINNSFGSFDAFKQQFNDAGTKRFGSGWVWL-VRSQQGDLQILSTPNQDSPLIEGHT--PIMGNDVWEHAYYLKYQ 176          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 77/187 (41.18%), Postives = 105/187 (56.15%), Query Frame = 3
Query:  150 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK-----------AVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYK 665
            +LP LPY Y ALEP    + M++HH KHHQ YV N N            +VE L + L+KV      + +  ++ N GGH NHS+FWK L       G      L  AI+  FGS+++  +K  A  A   GSGW WL L  + K L V +TANQD PL+ +A    +  P++G+DVWEHAYYL+++
Sbjct:    4 SLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELAKFSVEDLIKDLDKVP----AEKRTFMRNNAGGHANHSLFWKGLKL-----GTTLTGDLKAAIERDFGSVDSFKEKFEAAAATRFGSGWAWLVLKDDGK-LAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQ 180          
The following BLAST results are available for this feature:
BLAST of FC930630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_STRAG1.079e-2941.90Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA51.079e-2941.90Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA31.079e-2941.90Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_SHIFL1.079e-2940.98Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_PASMU1.079e-2945.11Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODM_ECO571.079e-2940.98Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]
SODM_STRP11.409e-2940.00Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_ECOLI1.840e-2940.44Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]
SODM2_PLEBO3.139e-2940.45Superoxide dismutase [Mn] 2 OS=Plectonema boryanum... [more]
SODM_YEREN4.099e-2941.18Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]

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Properties
Property NameValue
Genbank descriptionC34009F02EF PostHarvC1 Citrus clementina cDNA clone C34009F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930630 ID=FC930630; Name=FC930630; organism=Citrus clementina; type=EST; length=707bp
GGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAACGTC
ACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAGCTAT
AGGCTTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACGGTCA
CGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGC
GGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTAC
TAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCG
ACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGA
GGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGA
AGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGC
ATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCA
GCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGTTTAA
AAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACTAAAG
CCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATAC
TACCTACAGTACAAGATGTCAACCAGATTATCTGAAAACATTTGAACGTA
ATGACTG
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