FC930630

Overview
NameFC930630
Unique NameFC930630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_STRAY (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus alactolyticus GN=sodA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  195 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 629
            I  E M LHH KHH  Y+ N N A+E+  +    ++      T     ++ A+  NGGGH+NH++FW+ L P  +   EP    L  AI+  FGS E      +       GSGW WL ++ E K L V +T NQD  +++     P+LG+
Sbjct:    2 IDKETMILHHDKHHATYLANANAALEKHPEIGEDLEFLLSDVTRIPEDIRQALINNGGGHLNHALFWELLTPEKQ---EPTAEVLA-AIEDAFGSFEDFKTAFTQAATTRFGSGWAWLVVNQEGK-LEVMSTGNQDNPISQGKQ--PILGL 145          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODF_AQUAE (Superoxide dismutase [Fe] OS=Aquifex aeolicus GN=sodB PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 58/164 (35.37%), Postives = 80/164 (48.78%), Query Frame = 3
Query:  195 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            IS E ++ H + H++ YV  YN+  E+L    N  D S   Q       L+    FN  G V H +++  LAP   GG   P  +L   I+   G L+A   ++ A  AA+   GW  LGLD    RLVV      +  V     L+PL+ ID +EHAYY+ YK
Sbjct:   20 ISNEQIEPHFEAHYKGYVAKYNEIQEKLADQ-NFADRSKANQNYSEYRELKVEETFNYMGVVLHELYFGMLAP---GGKGEPSEALKKKIEEDLGGLDACTNELKA--AAIAFRGWAILGLDIFSGRLVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYYVDYK 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODF_AQUPY (Superoxide dismutase [Fe] OS=Aquifex pyrophilus GN=sodB PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 57/164 (34.76%), Postives = 79/164 (48.17%), Query Frame = 3
Query:  195 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            IS E ++ H + H++ YV  YN+  E+L    N  D S   Q       L+    FN  G V H +++  L P   GG   P  +L   I+   G L+A   ++ A  AA+   GW  LGLD    RLVV      +  V     L+PL+ ID +EHAYY+ YK
Sbjct:   20 ISNEQIEPHFEAHYKGYVAKYNEIQEKLADQ-NFADRSKANQNYSEYRELKVEETFNYMGVVLHELYFGMLTP---GGKGEPSEALKKKIEEDIGGLDACTNELKA--AAMAFRGWAILGLDIFSGRLVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYYVDYK 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_HALHI (Superoxide dismutase [Mn] (Fragment) OS=Haloarcula hispanica GN=sod PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 48/140 (34.29%), Postives = 60/140 (42.86%), Query Frame = 3
Query:  243 YVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQY 662
            YV     A E L +     D  +     G +  NG GH  H++FW+N+ P   GGGEP    L   I+  FGS E    K   E AA    GW  L  D   K+L        D          P+L +DVWEH+YY  Y
Sbjct:    2 YVNGLESAEETLAENRESGDFGSSAAAMGNVTHNGCGHYLHTLFWENMDP--NGGGEPEGELLD-RIEEDFGSYEG--WKGEFEAAASAAGGWALLVYDPVAKQLRNVPVDKHDQGALWGSH--PILALDVWEHSYYYDY 134          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM2_HALME (Superoxide dismutase [Mn] 2 (Fragment) OS=Halobacterium mediterranei GN=sod2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 46/141 (32.62%), Postives = 64/141 (45.39%), Query Frame = 3
Query:  243 YVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQY 662
            YV   N A E L +  +  D         ++  NG GH  H +FW+ + P   GGG  P   L   I++ FGS E   +    E A+    GW  L  D   K+L  +    + D  +  A    P+L +DVWEH+YY QY
Sbjct:    2 YVNGLNAAEETLRENRSSGDMDGSAAAMRSVSHNGCGHYLHHLFWRCMTP--NGGGGEPTGDLRDRIESDFGSYEGW-EAEFREAASWPAGGWALLVYDPVTKQLRNLAVQKHNDGALWSAH---PILALDVWEHSYYFQY 136          
The following BLAST results are available for this feature:
BLAST of FC930630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_STRAY2.184e-1435.10Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_AQUAE4.118e-1335.37Superoxide dismutase [Fe] OS=Aquifex aeolicus GN=s... [more]
SODF_AQUPY1.198e-1234.76Superoxide dismutase [Fe] OS=Aquifex pyrophilus GN... [more]
SODM_HALHI2.951e-1134.29Superoxide dismutase [Mn] (Fragment) OS=Haloarcula... [more]
SODM2_HALME3.855e-1132.62Superoxide dismutase [Mn] 2 (Fragment) OS=Halobact... [more]

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Properties
Property NameValue
Genbank descriptionC34009F02EF PostHarvC1 Citrus clementina cDNA clone C34009F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930630 ID=FC930630; Name=FC930630; organism=Citrus clementina; type=EST; length=707bp
GGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAACGTC
ACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAGCTAT
AGGCTTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACGGTCA
CGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGC
GGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTAC
TAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCG
ACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGA
GGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGA
AGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGC
ATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCA
GCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGTTTAA
AAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACTAAAG
CCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATAC
TACCTACAGTACAAGATGTCAACCAGATTATCTGAAAACATTTGAACGTA
ATGACTG
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