FC930630

Overview
NameFC930630
Unique NameFC930630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 145.976 bits (367), Expect = 1.900e-34
Identity = 80/178 (44.94%), Postives = 104/178 (58.43%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            LP+LPY Y ALEP I  E M +HH KHH  YVTN NKAVE      NK     V  L         A++ NGGGH NH +FW  L+P   GGGEP   +L   I++ FGS +   ++ +A  A   GSGW WL ++    +L + +T NQD  +++  T  P+LG+DVWEHAYYL Y+
Sbjct:    5 LPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSP--NGGGEPT-GALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNN--GKLEITSTPNQDSPLSEGKT--PILGLDVWEHAYYLNYQ 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_PIG (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Sus scrofa GN=SOD2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.240e-34
Identity = 78/147 (53.06%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  195 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 635
            I+ +IMQLHH +HH AYV N N   E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      LVPLLGIDV
Sbjct:    2 INAQIMQLHHSEHHAAYVNNLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLVPLLGIDV 144          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.527e-34
Identity = 79/182 (43.41%), Postives = 107/182 (58.79%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            LP+LPY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+
Sbjct:    6 LPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNN--GELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQ 176          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.428e-34
Identity = 80/182 (43.96%), Postives = 106/182 (58.24%), Query Frame = 3
Query:  150 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            TLP LPY Y ALEP I  + M++HH KHHQ YV   N A          VE+L  A+ ++  S    L+GA+  +GGGH NHS+FW  ++P  +GGGE PH  L  AI +  G  +A  +  +       GSGW WL + T  K LVVE++ NQD  +    T  P+ G+DVWEHAYYL+Y+
Sbjct:    4 TLPALPYAYDALEPHIDAQTMEIHHTKHHQTYVNGLNAAIEGTEWAEWPVEKLVGAVKQLPES----LRGAVTNHGGGHANHSLFWTVMSP--QGGGE-PHGQLAQAIASQLGGFDAFKEAFTKAALTRFGSGWAWLSV-TPQKTLVVESSGNQDSPLMFGNT--PIFGLDVWEHAYYLKYQ 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.428e-34
Identity = 74/181 (40.88%), Postives = 110/181 (60.77%), Query Frame = 3
Query:  144 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V        +++GA++ +GGGH NH++FW +L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  +++  T  P+LG+DVWEHAYYL+++
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNN--GKLEIVSTANQDSPLSEGKT--PVLGLDVWEHAYYLKFQ 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.583e-33
Identity = 84/187 (44.92%), Postives = 107/187 (57.22%), Query Frame = 3
Query:  150 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYK 665
            TLP LPY Y ALEP I    M++HH KHHQ YV N NKA          VEQL Q L++V        +GA++ N GGH NHS+FW+ +     + G   P   L  AI++ FGS +A  QK         GSGW WL +  +  +L V +TANQD PL+ +A   V   P+LG+DVWEHAYYL Y+
Sbjct:    4 TLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADK----KGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVV--KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQ 184          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.679e-33
Identity = 77/184 (41.85%), Postives = 106/184 (57.61%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--FQALNKVDTSTVV-------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL---VPLLGIDVWEHAYYLQYK 665
            LP LPYDY +LEP +    M +HH KHHQ YV N N A+++    + L  VD +  V        +   I+ NGGGH NHS FWK +       G  P+  +  AI+  FGS++ +  K +A  A   GSGW WL +  +   L +++T NQD PL+T  P +   +PLLG+DVWEHAYYL+Y+
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLNAALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNG--PNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKPD-GSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQ 185          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.679e-33
Identity = 80/178 (44.94%), Postives = 100/178 (56.18%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNN--GELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQ 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 80/178 (44.94%), Postives = 100/178 (56.18%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            LP LPY Y ALEP I  E M +HH KHH  YVTN N A+E      NK     +  L+        A++ NGGGH NHS+FW  L+P   GGGEP    L  AI+  FGS  A   + S   A   GSGW WL ++     L + +T NQD  + +  T  P+LG+DVWEHAYYL+Y+
Sbjct:    5 LPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSNLEALPESIRTAVRNNGGGHANHSLFWTILSP--NGGGEPT-GELADAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNN--GELEITSTPNQDSPIMEGKT--PILGLDVWEHAYYLKYQ 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.982e-33
Identity = 77/179 (43.02%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  147 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYR 174          
The following BLAST results are available for this feature:
BLAST of FC930630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_BACSU1.900e-3444.94Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODM_PIG3.240e-3453.06Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM1_BACAN5.527e-3443.41Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_PSEPU9.428e-3443.96Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM_LISIV9.428e-3440.88Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_DEIRA3.583e-3344.92Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_CHLRE4.679e-3341.85Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_BACCA4.679e-3344.94Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_BACST6.111e-3344.94Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]
SODM_STRR67.982e-3343.02Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionC34009F02EF PostHarvC1 Citrus clementina cDNA clone C34009F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930630 ID=FC930630; Name=FC930630; organism=Citrus clementina; type=EST; length=707bp
GGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAACGTC
ACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAGCTAT
AGGCTTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACGGTCA
CGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGC
GGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTAC
TAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCG
ACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGA
GGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGA
AGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGC
ATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCA
GCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGTTTAA
AAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACTAAAG
CCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATAC
TACCTACAGTACAAGATGTCAACCAGATTATCTGAAAACATTTGAACGTA
ATGACTG
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