FC930630

Overview
NameFC930630
Unique NameFC930630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.982e-33
Identity = 77/179 (43.02%), Postives = 103/179 (57.54%), Query Frame = 3
Query:  147 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYR 174          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.042e-32
Identity = 78/185 (42.16%), Postives = 103/185 (55.68%), Query Frame = 3
Query:  144 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            T TLP+LPY Y ALEP I  E M LHH KHH  YVTN N           K+VE L   +N +       ++ A++ NGGGH NH+ FW+ +AP    GG+P   ++  AID  FGS + +            GSGW WL ++    +L + +T NQD  +    T  P+LG+DVWEHAYYL+YK
Sbjct:    2 TYTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGEKSVENLISDMNAIPE----DIRTAVRNNGGGHANHTFFWEIMAP--NAGGQPT-GAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLVVNN--GKLEITSTPNQDSPLMDGQT--PVLGLDVWEHAYYLKYK 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 75/181 (41.44%), Postives = 107/181 (59.12%), Query Frame = 3
Query:  144 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            T  LP LPY Y ALEP    E M++H+ KHH  YVT  N+AV    +  +K     V  L       +GA++ +GGGH NH++FW  L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVND--GKLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQ 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 76/181 (41.99%), Postives = 107/181 (59.12%), Query Frame = 3
Query:  144 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV-------EQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            T  LP LPY Y ALEP    E M+LH+ KHH  YVT  N+AV       E+  + L     S    ++GA++ +GGGH NH++FW  L+P    GG  P   L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++
Sbjct:    2 TYELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSP---NGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLVVNN--GKLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQ 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_AGABI (Superoxide dismutase [Mn], mitochondrial OS=Agaricus bisporus GN=sod PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.322e-32
Identity = 76/172 (44.19%), Postives = 102/172 (59.30%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKF--NGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQY 662
            LPDLPY Y ALEP IS +IM+LHH+K              Q  +   +  T+ V     ++ F     GH+NHS+FW+NLAP    GG+     L  AID  FG L+ L ++ +   A +QGSGW WLG++   KRL + TT NQDPL+     LVP++G+D+WEHA+YLQY
Sbjct:    5 LPDLPYAYDALEPYISRQIMELHHKKTSSDLCE-----CAQHCRGCLRHSTAVVGGFDLSLFFILTTLGHINHSLFWQNLAPAAGAGGQLKPGPLKDAIDQTFGGLDNLKKEFNTTTAGIQGSGWGWLGVNPSNKRLEISTTPNQDPLL----NLVPIIGVDIWEHAFYLQY 167          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.033e-32
Identity = 75/177 (42.37%), Postives = 104/177 (58.76%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQ 172          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.033e-32
Identity = 75/177 (42.37%), Postives = 104/177 (58.76%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            LP+LPY Y ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+
Sbjct:    5 LPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQ 172          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.961e-32
Identity = 77/177 (43.50%), Postives = 100/177 (56.50%), Query Frame = 3
Query:  153 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV------EQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            LP LPY Y ALEP I    M++HH KHHQ YV N N A+      EQ  ++L +       +L+  +  NGGGH NHS+FW  ++P  +GGG  P   LG AID   G  EA     +       GSGW WL + T    L+VE++ NQD  +    T  P+LG+DVWEHAYYL+Y+
Sbjct:    5 LPPLPYAYDALEPHIDALTMEIHHSKHHQTYVNNLNAALEGTPYAEQPVESLLRQLAGLPEKLRTPVVNNGGGHANHSLFWTVMSP--QGGGR-PDGDLGRAIDEQLGGFEAFKDAFTKAALTRFGSGWAWLSV-TPQGSLLVESSGNQDSPLMNGNT--PILGLDVWEHAYYLKYQ 175          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.961e-32
Identity = 76/178 (42.70%), Postives = 103/178 (57.87%), Query Frame = 3
Query:  165 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYK 665
            PY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NGGGH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+
Sbjct:   25 PYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNGGGHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNN--GELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQ 191          
BLAST of FC930630 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.174e-32
Identity = 78/178 (43.82%), Postives = 106/178 (59.55%), Query Frame = 3
Query:  150 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQ----ALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQY 662
            TLP+LPY  +ALEP      M+LHH KHHQ YV N N A+E+  +    +L ++  D S + + ++ A++ NGGGH+NHS FW  L P  +G        +G AI   FGS E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYYL+Y
Sbjct:    4 TLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKY 178          
The following BLAST results are available for this feature:
BLAST of FC930630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_STRPN7.982e-3343.02Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_ENTFA1.042e-3242.16Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_LISMO1.361e-3241.44Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM_LISIN1.361e-3241.99Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODM_AGABI2.322e-3244.19Superoxide dismutase [Mn], mitochondrial OS=Agaric... [more]
SODM_STAES3.033e-3242.37Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ3.033e-3242.37Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_PSEAE3.961e-3243.50Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODM1_BACCR3.961e-3242.70Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM_LACLM5.174e-3243.82Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]

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Properties
Property NameValue
Genbank descriptionC34009F02EF PostHarvC1 Citrus clementina cDNA clone C34009F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930630 ID=FC930630; Name=FC930630; organism=Citrus clementina; type=EST; length=707bp
GGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAACGTC
ACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAGCTAT
AGGCTTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACGGTCA
CGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGATTAGC
GGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACGTTAC
TAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAAGTCG
ACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGGCGGA
GGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGA
AGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGACACGC
ATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCA
GCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGTTTAA
AAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACTAAAG
CCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATAC
TACCTACAGTACAAGATGTCAACCAGATTATCTGAAAACATTTGAACGTA
ATGACTG
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