FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 4.418e-60
Identity = 110/192 (57.29%), Postives = 134/192 (69.79%), Query Frame = 2
Query:   83 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            KFFVGGNWKCNGT E + K+VS LN A                      KS L     V+AQN W+ KGGAFTGE+SAE LV++   WVILGHSERR ++ E ++F+G K AYALS+ LKV+AC+GE LE+RE+G T  V  +Q KA A+ I++W NVV+AYEPVWAIGTGKVA+P QAQEVHA +R WLKT
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQV--KSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKT 237          

HSP 2 Score: 29.6462 bits (65), Expect = 4.418e-60
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCN 714
            NVSA+VA++ RIIYGG  N
Sbjct:  238 NVSADVASTVRIIYGGSVN 256          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 8.172e-59
Identity = 108/209 (51.67%), Postives = 134/209 (64.11%), Query Frame = 2
Query:   29 SSRFHRQTKQNSIVVMARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            SS  HR  +    +  + KFFVGGNWKCNGT + + K++S LN A                      KS L     ++ QN WV KGGAFTGE+S E L +L   WVILGHSERR ++ E ++F+G K AYALS GL VIAC+GE LE+RE+G T  V   Q KA A+ + +WDN+V+AYEPVWAIGTGKVA+P QAQEVH  +R WLK
Sbjct:   47 SSSSHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQV--KSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLK 253          

HSP 2 Score: 32.7278 bits (73), Expect = 8.172e-59
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS EVA+ TRIIYGG  NG
Sbjct:  255 NVSEEVASKTRIIYGGSVNG 274          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.389e-58
Identity = 106/200 (53.00%), Postives = 134/200 (67.00%), Query Frame = 2
Query:   62 SIVVMAR--KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            ++V MA   KFFVGGNWKCNGT + + K+VS LN A+                     KS L     ++ QN WV KGGAFTGE+S E L ++   WVILGHSERR ++ E + F+G K AYAL+ GL VIAC+GE LE+RE+G T  V  EQ KA A+ + +W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R+WLK
Sbjct:   55 AVVAMAGTGKFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFLYLDQV--KSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLK 252          

HSP 2 Score: 34.6538 bits (78), Expect = 1.389e-58
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVSAEVA+ TRIIYGG  NG
Sbjct:  254 NVSAEVASKTRIIYGGSVNG 273          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 4.702e-53
Identity = 104/192 (54.17%), Postives = 126/192 (65.62%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            M RKF VGGNWK NG    +  +   L                         +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES++ + DKVA+AL+ GLKVIAC+GETL++RE+G T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK A+P QAQEVHA LRKW
Sbjct:    1 MGRKFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAPYLTLA--RSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKW 190          

HSP 2 Score: 26.1794 bits (56), Expect = 4.702e-53
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            +NVSA+V+A+ RI YGG
Sbjct:  193 ENVSADVSAAIRIQYGG 209          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.702e-53
Identity = 101/194 (52.06%), Postives = 129/194 (66.49%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            +RKFFVGGNWK NG  + + ++++TLN  +                     K  L + F V+AQNC+    GAFTGE+S  M+ +    WVILGHSERR +  ES++ +G KVA+ALS  + VI C+GE L+QRE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR+WLKT
Sbjct:    3 SRKFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPTIYLDFARQK--LDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKT 194          

HSP 2 Score: 28.1054 bits (61), Expect = 4.702e-53
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS +VA S RIIYGG   G
Sbjct:  195 NVSEDVAKSVRIIYGGSVTG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.042e-52
Identity = 101/194 (52.06%), Postives = 128/194 (65.98%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+ALS GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK+
Sbjct:    3 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKS 194          

HSP 2 Score: 28.4906 bits (62), Expect = 1.042e-52
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS  VA STRIIYGG   G
Sbjct:  195 NVSDAVAQSTRIIYGGSVTG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.358e-52
Identity = 100/194 (51.55%), Postives = 129/194 (66.49%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L +   VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK+
Sbjct:    4 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKS 195          

HSP 2 Score: 28.4906 bits (62), Expect = 1.358e-52
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS  VA STRIIYGG   G
Sbjct:  196 NVSDAVAQSTRIIYGGSVTG 215          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 1.770e-52
Identity = 100/194 (51.55%), Postives = 127/194 (65.46%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK+
Sbjct:    4 SRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKS 195          

HSP 2 Score: 28.8758 bits (63), Expect = 1.770e-52
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS  VA STRIIYGG   G
Sbjct:  196 NVSEAVAQSTRIIYGGSVTG 215          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 1.770e-52
Identity = 100/194 (51.55%), Postives = 127/194 (65.46%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK+
Sbjct:    4 SRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKS 195          

HSP 2 Score: 28.8758 bits (63), Expect = 1.770e-52
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS  VA STRIIYGG   G
Sbjct:  196 NVSEAVAQSTRIIYGGSVTG 215          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.307e-52
Identity = 100/194 (51.55%), Postives = 127/194 (65.46%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK+
Sbjct:    4 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKS 195          

HSP 2 Score: 28.4906 bits (62), Expect = 2.307e-52
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS  VA STRIIYGG   G
Sbjct:  196 NVSDAVAQSTRIIYGGSVTG 215          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SECCE4.418e-6057.29Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH8.172e-5951.67Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN1.389e-5853.00Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_CULTA4.702e-5354.17Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_XENTR4.702e-5352.06Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_RABIT1.042e-5252.06Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_CANFA1.358e-5251.55Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_MACMU1.770e-5251.55Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA1.770e-5251.55Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_PONAB2.307e-5251.55Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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