FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PELPB (Triosephosphate isomerase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.620e-31
Identity = 78/189 (41.27%), Postives = 103/189 (54.50%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGT-SEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            R+  V GNWK N + +E V+     L                         K +  S+  + AQNC     GAFTGEVSA M++ +    VI+GHSERR    E+N  V  ++  ALS GL VI CVGETL +RESG    V++ Q +   + I +   +V+AYEPVWAIGTGK A+ AQA+EVH  +R
Sbjct:    2 RRKIVVGNWKMNNSVAESVQLATDVLAALGEGFSGCEVGIAPTYLALDATEKVIAESEVQLVAQNCHYENDGAFTGEVSARMILAVGCSSVIIGHSERRQYFGETNATVNLRIKKALSEGLNVILCVGETLAERESGVMETVISSQVREGLDGIIDISAIVIAYEPVWAIGTGKTASSAQAEEVHLFIR 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPL (Triosephosphate isomerase OS=Legionella pneumophila (strain Lens) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.421e-31
Identity = 73/189 (38.62%), Postives = 106/189 (56.08%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            R+  V GNWK NG  ++V ++VS + +                         L      V AQN + +  GA+TGE+SA ML +    +V++GHSERR   +E  +FV  K  +    G+  + CVGETL +RE+G T  V+A+Q  A++ K  + + + V+AYEPVWAIGTGK ATP QAQ++H  +R
Sbjct:    2 RQKIVAGNWKMNGQIQQVTELVSQIEKLIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIR 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PSEHT (Triosephosphate isomerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.469e-31
Identity = 77/198 (38.89%), Postives = 109/198 (55.05%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            ARK  V GNWK NG+ E VK++   +N  +                      +++ S      Q       GAFTGEV A+++  L   +V++GHSERR++  ESND V  K A A   GL  I CVGE+  ++E+G T  +VA Q  A+ EK  ++   + V+AYEPVWAIGTGK A+P QAQ VH  +R  + +++
Sbjct:    3 ARKAMVAGNWKMNGSLELVKQMSDAINNVKSNEIDIVLFPPFPLV------SAMIASGVSTGTQTVSENTPGAFTGEVDAQLIKELGAQYVLVGHSERRSIYKESNDVVAAKFARAQQVGLTPILCVGESESEQENGKTEQIVAAQIDAVIEKLGVAALKDSVIAYEPVWAIGTGKTASPEQAQSVHKFIRDKIASLN 194          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.469e-31
Identity = 75/186 (40.32%), Postives = 102/186 (54.84%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            V GNWK NG+   V ++V+ L                         ++   S  H+ AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    +GL  + C+GET  + E+G T  V A Q  A+   +  + ++ VV+AYEPVWAIGTGK ATPAQAQ VH  +R
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRTELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIR 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.469e-31
Identity = 73/194 (37.63%), Postives = 111/194 (57.22%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            RK  V GNWK +  + + +++++ L                           L  +   V+AQN    +GGAFTGE+SA+ML ++ +  VILGHSERRA+ +E++  + +KV  AL   + VI C GE L+ R+SG+   +V  Q +     I+  +W  +VLAYEPVWAIGTG+ A+P QAQE+H  +R+ ++
Sbjct:    2 RKSIVAGNWKMHKNAAQTEELLNELIAKIPAKTNAQVIVAPTFVNLQAAAAKLKNTTIGVSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTALKHDMTVIFCFGEELKDRQSGNHFNIVENQLRDGVFHIAKESWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIR 195          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHELP (Triosephosphate isomerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.836e-31
Identity = 79/203 (38.92%), Postives = 111/203 (54.68%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTL------NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NGT++  +++ +        + AE                     ++L      + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGTAQLAQELFTKFATKLQNDSAEVVLCPPSIFLESVRQQLDANKEALNGCLVRMGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.179e-31
Identity = 77/191 (40.31%), Postives = 107/191 (56.02%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVR-KGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            R+  V GNWK +GT   V ++   L+                          L   +  V AQN  V+ + GA TGEV+ E LV      V++GHSERR ++ E+++ +  K A A ++GLK + C+GETLE+RE+G T+ VV  Q  +I E   +  + N V+AYEPVWAIGTG  ATP QAQ+VHA +R
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTEGLSNLALPSGVEVAVFPPALFINQVID-GLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQVIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIR 191          

HSP 2 Score: 21.9422 bits (45), Expect = 7.179e-31
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  667 AEVAASTRIIYGG 705
            AEVAA  +++YGG
Sbjct:  199 AEVAAKVQLLYGG 211          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.622e-31
Identity = 77/191 (40.31%), Postives = 100/191 (52.36%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK N    E  + ++++                         +    S+  VAAQN      GAFTGEVS  ML +L +  V+LGHSERR L  E+N+ V  K   A +  L  I CVGETL+QRE+  T+ +V EQ K     ++N      ++AYEPVWAIGTGK AT  QA EV  E+RK
Sbjct:    2 RKKVIAGNWKMNKVLSEAGEFMNSVVPKAPKGNDVEAIVCAPFPFLSKLVEQAKGSEVKVAAQNMHFEDSGAFTGEVSPVMLKDLGVTHVVLGHSERRELFAETNELVNKKTKAAFAHDLTPIVCVGETLDQREANETMNIVGEQVKQAVAGLTNEQVAETIIAYEPVWAIGTGKTATSEQANEVCTEIRK 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CARHZ (Triosephosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.622e-31
Identity = 82/193 (42.49%), Postives = 107/193 (55.44%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQT-KAIAEKISNW-DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            RK F+ GNWK   T  E    V  L ++                      ++L  S+  + AQN    K GAFTGEVS  ML ++ + +VILGHSERRA   E+++ +  K+  A + GL  I CVGETLE+RE G T AVV  Q  K +A   +   +N+ +AYEPVWAIGTGK ATP  AQEV   +R+ L
Sbjct:    2 RKPFIAGNWKMYKTPVEAAGFVRELIDSLKDVSGVDVAVCPPFPALWPVKEALEGSNIALGAQNMHFEKEGAFTGEVSPAMLQDIGVKYVILGHSERRAYFGETDELINQKIKAAFTWGLNPIFCVGETLEERERGITKAVVEIQVLKGLAGVTAEQAENLTIAYEPVWAIGTGKTATPDDAQEVCQFIRELL 194          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_TREDE (Triosephosphate isomerase OS=Treponema denticola GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 76/196 (38.78%), Postives = 108/196 (55.10%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            +KF++  NWK N    E K++ + + +A                        L  S+  + AQN  + + GA TGEVS   L+++ +  VILGHSERR +  E++D +  KV  AL  GL+VI CVGE LE+RE+G   AV   Q K    ++S  + D V +AYEPVWAIGTGK A+P  A  +H+ +RK L  +
Sbjct:    2 KKFYIAANWKMNMNRAEAKQLATEM-KAGLKDGKNKYMIAPSFTLLQDVASVLKGSNILLGAQNMGLEEKGAHTGEVSVLQLLDVGVQAVILGHSERRHIYKETDDLINKKVKLALKHGLEVILCVGELLEEREAGHAEAVCERQIKKGLAEVSAKDLDKVTIAYEPVWAIGTGKNASPEDADAIHSSIRKTLAAL 196          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PELPB2.620e-3141.27Triosephosphate isomerase OS=Pelodictyon phaeoclat... [more]
TPIS_LEGPL3.421e-3138.62Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_PSEHT4.469e-3138.89Triosephosphate isomerase OS=Pseudoalteromonas hal... [more]
TPIS_KLEPN4.469e-3140.32Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_FLAJ14.469e-3137.63Triosephosphate isomerase OS=Flavobacterium johnso... [more]
TPIS_SHELP5.836e-3138.92Triosephosphate isomerase OS=Shewanella loihica (s... [more]
TPIS_PSEPG7.179e-3140.31Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_OCEIH7.622e-3140.31Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]
TPIS_CARHZ7.622e-3142.49Triosephosphate isomerase OS=Carboxydothermus hydr... [more]
TPIS_TREDE9.955e-3138.78Triosephosphate isomerase OS=Treponema denticola G... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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