FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEWM (Triosephosphate isomerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 82/203 (40.39%), Postives = 111/203 (54.68%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  + L  + AE                     ++L      + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAQLAQELFKKFATKLQNDSAEVVLCPPTIYLESVRQQLDANKEALNGCLVRMGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_RUTMC (Triosephosphate isomerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 73/193 (37.82%), Postives = 108/193 (55.96%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R+  + GNWK N + E    +V  +                           ++ S  ++ AQN  V K GAFTGE+SA+M+ +    +VI+GHSERR+L  E+++ V  KV  AL   L  + C+GE LE RES +T +VV++Q + + ++  I  + N+++AYEPVWAIGT   ATP QAQ+ HA +R  L
Sbjct:    2 RQIIIAGNWKMNASKEATNTLVIGILSGMADVKSKVIVCVPSLYMSQVEVL-VVDSQLNLGAQNLNVNKLGAFTGEISADMIKDFGAKYVIVGHSERRSLYGETDEIVAQKVQVALDNNLTPLFCIGELLEDRESNNTKSVVSKQIQVVIDRVGIEAFKNIIVAYEPVWAIGTNVTATPQQAQDTHAFIRSML 193          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBP (Triosephosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 80/192 (41.67%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK N T  E K+I   L  A                       S+ R S   V AQN +     A TGE+S   L  L I  V++GHSERR  L E+++F   K++Y L  GL+V+ CVGET  +RE G+T +V+ +Q     + I++  + N+V+AYEPVWAIGTGKVATP +A+E HA +RK
Sbjct:    2 RKKIIAGNWKMNLTLAEAKEITKGLLSA--CDSSSYEIMVFPSALHLESVASIARDSQLIVGAQNAYQSGLTAMTGEISPVQLAELGIQTVLVGHSERRQFLGETSEFDNTKISYFLKHGLRVVYCVGETWAEREKGNTFSVLEDQIGKGLKGITSDLFKNLVIAYEPVWAIGTGKVATPVEAEEAHAFIRK 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBA (Triosephosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 80/192 (41.67%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK N T  E K+I   L  A                       S+ R S   V AQN +     A TGE+S   L  L I  V++GHSERR  L E+++F   K++Y L  GL+V+ CVGET  +RE G+T +V+ +Q     + I++  + N+V+AYEPVWAIGTGKVATP +A+E HA +RK
Sbjct:    2 RKKIIAGNWKMNLTLAEAKEITKGLLSA--CDSSSYEIMVFPSALHLESVASIARDSQLIVGAQNAYQSGLTAMTGEISPVQLAELGIQTVLVGHSERRQFLGETSEFDNTKISYFLKHGLRVVYCVGETWAEREKGNTFSVLEDQIGKGLKGITSDLFKNLVIAYEPVWAIGTGKVATPVEAEEAHAFIRK 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ERWCT (Triosephosphate isomerase OS=Erwinia carotovora subsp. atroseptica GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 75/186 (40.32%), Postives = 101/186 (54.30%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            V GNWK NG++  V ++++ L +                         L  S   + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++F+  K       GL  + C+GET  + E+G T AV A Q  A+   +    ++N V+AYEPVWAIGTGK ATPAQAQ VH  +R
Sbjct:    6 VMGNWKLNGSTNLVNELIAGLRKELSTVDGCGVAIAPPAIYLDQANHQLAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFGVLKDAGLIPVLCIGETEAENEAGQTEAVCARQLDAVLNTLGAKAFENTVVAYEPVWAIGTGKSATPAQAQAVHKFIR 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.217e-30
Identity = 78/194 (40.21%), Postives = 108/194 (55.67%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD-FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            RK  V GNWK N T  E   +   L+EA                       + + ++   VAA+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA  +E+ + +  KV  AL+ GL  I C+GE LE+RE+G    VV  Q       +S  ++  ++LAYEPVWAIGTGK A+  QA+E+HA +R  L
Sbjct:    2 RKNIVAGNWKMNTTLAEGLALAKGLDEALKGKTPNCDVIIGTPFTHLASVAAAIDTNKIGVAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIRATL 195          

HSP 2 Score: 23.0978 bits (48), Expect = 1.217e-30
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  670 EVAASTRIIYGGFCN 714
            EVA +  I+YGG CN
Sbjct:  202 EVADNCTILYGGSCN 216          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_VESOH (Triosephosphate isomerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 75/194 (38.66%), Postives = 110/194 (56.70%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R+  + GNWK N + E    +V  +                         ++L+  S  ++ AQ+  + K GAFTGEVS +M+ +    +VI+GHSERR+L  E+N+ V  KV  AL+  L  + C+GE LE R+SG T  VV+EQ +A+ +   I  + ++++AYEPVWAIGTG  ATP QAQ+ HA +R  L
Sbjct:    2 RQVIIAGNWKMNASKEATNILVMDI--LSGMVDVKSKVIICVPFPYMAQVEALVGCSQLNLGAQDLNINKSGAFTGEVSVDMIKDFGARYVIVGHSERRSLYFENNEIVAQKVQVALNNNLTPLLCIGELLEDRDSGKTQEVVSEQIQAVIDLVGIDAFKDIIVAYEPVWAIGTGITATPQQAQDTHAFIRSML 193          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHESR (Triosephosphate isomerase OS=Shewanella sp. (strain MR-7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 82/203 (40.39%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  S L  + AE                     ++L  S   + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHESM (Triosephosphate isomerase OS=Shewanella sp. (strain MR-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 82/203 (40.39%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  S L  + AE                     ++L  S   + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHESA (Triosephosphate isomerase OS=Shewanella sp. (strain ANA-3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 82/203 (40.39%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  S L  + AE                     ++L  S   + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SHEWM9.955e-3140.39Triosephosphate isomerase OS=Shewanella woodyi (st... [more]
TPIS_RUTMC9.955e-3137.82Triosephosphate isomerase OS=Ruthia magnifica subs... [more]
TPIS_LEPBP9.955e-3141.67Triosephosphate isomerase OS=Leptospira biflexa se... [more]
TPIS_LEPBA9.955e-3141.67Triosephosphate isomerase OS=Leptospira biflexa se... [more]
TPIS_ERWCT9.955e-3140.32Triosephosphate isomerase OS=Erwinia carotovora su... [more]
TPIS_PARD81.217e-3040.21Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_VESOH1.300e-3038.66Triosephosphate isomerase OS=Vesicomyosocius okuta... [more]
TPIS_SHESR1.300e-3040.39Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESM1.300e-3040.39Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESA1.300e-3040.39Triosephosphate isomerase OS=Shewanella sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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