FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEON (Triosephosphate isomerase OS=Shewanella oneidensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 82/203 (40.39%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  S L  + AE                     ++L  S   + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PELPD (Triosephosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 83/194 (42.78%), Postives = 109/194 (56.19%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSV 667
            + GNWK + T  E   +V  L                          +L  SD  +AAQ+C+  + GAFTGEVS   L +     VI+GHSERR L  E+++ V  K   A++ GL  I CVGET+E+RES +T  VV  Q T A+A  +S+ +  +V+AYEPVWAIGTGK AT  QAQEVH  +R  L TMS+
Sbjct:    6 IAGNWKLHKTIAESLAMVDELKPLVAGSRGVEIVVAPVFTALKSVSFALNGSDIGLAAQDCFWEEQGAFTGEVSPAQLRDAGCSHVIIGHSERRQLFGETDEGVNRKARAAVAVGLTAIICVGETMEERESRATFTVVGRQVTAALAGFLSHEFSRIVIAYEPVWAIGTGKTATDQQAQEVHCYIRN-LVTMSI 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTE (Triosephosphate isomerase OS=Chlorobium tepidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.300e-30
Identity = 79/183 (43.17%), Postives = 96/183 (52.46%), Query Frame = 2
Query:   98 GNWKCNGT-SEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            GNWK N T +E V    +   +                       K +  S   + AQNC     G FTGEVS  ML      +VILGHSERR L  E+N  V  KV  AL+ GL VI CVGETL++RE G T  +V  Q       +++   +V+AYEPVWAIGTGK AT  QAQEVHA +R
Sbjct:    3 GNWKMNNTIAESVDLATAIAEKVGADGVQCEVGIAPTFPALYEVCKVIEWSGIRLCAQNCHYESDGPFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNATVNLKVKKALAEGLSVILCVGETLDERERGVTGQIVTAQVVEGLIDVTDISKLVIAYEPVWAIGTGKTATKEQAQEVHALIR 185          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHESW (Triosephosphate isomerase OS=Shewanella sp. (strain W3-18-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.698e-30
Identity = 82/203 (40.39%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  S L  + AE                     ++L  S   + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPC (Triosephosphate isomerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.698e-30
Identity = 82/203 (40.39%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  S L  + AE                     ++L  S   + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB9 (Triosephosphate isomerase OS=Shewanella baltica (strain OS195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.698e-30
Identity = 82/203 (40.39%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  S L  + AE                     ++L  S   + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB8 (Triosephosphate isomerase OS=Shewanella baltica (strain OS185) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.698e-30
Identity = 82/203 (40.39%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  S L  + AE                     ++L  S   + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB5 (Triosephosphate isomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.698e-30
Identity = 82/203 (40.39%), Postives = 112/203 (55.17%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  S L  + AE                     ++L  S   + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CYTH3 (Triosephosphate isomerase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.698e-30
Identity = 75/194 (38.66%), Postives = 108/194 (55.67%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            RK  + GNWK N T EE   + S + N A+                       ++     + AQN + ++ GAFTGE+SA ML ++ + +VI+GHSERR    E+N  + DKV  +L+ GL  + C GETL QRE+G  +  V  Q       +S  ++  VV+AYEP+WAIGTG  A+  QAQE+HA++R+ L
Sbjct:    2 RKKVIAGNWKMNKTLEEGLSLASEVANMAKDEVPADVNLVMCIPYISLAAVSKVINDKVAIGAQNVYQKESGAFTGEISAPMLKSVGVKYVIIGHSERREYFGETNQQLADKVTISLANGLTPLFCCGETLAQREAGIHINFVNAQLTESLFHLSPEDFKKVVIAYEPIWAIGTGVTASDEQAQEMHAKIREHL 195          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPK (Triosephosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.064e-30
Identity = 76/191 (39.79%), Postives = 107/191 (56.02%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVR-KGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            R+  V GNWK +GT   V ++   L+                          L   +  V AQN  V+ + GA TGEV+ E LV      V++GHSERR ++ E+++ +  K A A ++GLK + C+GETLE+RE+G T+ VV  Q  +I E   +  + + V+AYEPVWAIGTG  ATP QAQ+VHA +R
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTKGLSNLALPSGVEVAVFPPALFINQVID-GLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIR 191          

HSP 2 Score: 21.9422 bits (45), Expect = 2.064e-30
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  667 AEVAASTRIIYGG 705
            AEVAA  +++YGG
Sbjct:  199 AEVAAKVQLLYGG 211          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SHEON1.300e-3040.39Triosephosphate isomerase OS=Shewanella oneidensis... [more]
TPIS_PELPD1.300e-3042.78Triosephosphate isomerase OS=Pelobacter propionicu... [more]
TPIS_CHLTE1.300e-3043.17Triosephosphate isomerase OS=Chlorobium tepidum GN... [more]
TPIS_SHESW1.698e-3040.39Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHEPC1.698e-3040.39Triosephosphate isomerase OS=Shewanella putrefacie... [more]
TPIS_SHEB91.698e-3040.39Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_SHEB81.698e-3040.39Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_SHEB51.698e-3040.39Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_CYTH31.698e-3038.66Triosephosphate isomerase OS=Cytophaga hutchinsoni... [more]
TPIS_PSEPK2.064e-3039.79Triosephosphate isomerase OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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