FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PSEP1 (Triosephosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.064e-30
Identity = 76/191 (39.79%), Postives = 107/191 (56.02%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVR-KGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            R+  V GNWK +GT   V ++   L+                          L   +  V AQN  V+ + GA TGEV+ E LV      V++GHSERR ++ E+++ +  K A A ++GLK + C+GETLE+RE+G T+ VV  Q  +I E   +  + + V+AYEPVWAIGTG  ATP QAQ+VHA +R
Sbjct:    2 RRPMVAGNWKMHGTRASVAELTKGLSNLALPSGVEVAVFPPALFINQVID-GLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIR 191          

HSP 2 Score: 21.9422 bits (45), Expect = 2.064e-30
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  667 AEVAASTRIIYGG 705
            AEVAA  +++YGG
Sbjct:  199 AEVAAKVQLLYGG 211          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_YERE8 (Triosephosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 73/186 (39.25%), Postives = 101/186 (54.30%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            V GNWK NG++  V ++++ L +                         L  S   + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++F+  K       GL  + C+GET  + E+G T AV A+Q  A+   +    ++  V+AYEP+WAIGTGK ATPAQAQ VH  +R
Sbjct:    6 VMGNWKLNGSTHMVNELIANLRKELSTVEGCGVAIAPPAIYLNQAKHELSGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDEFIAKKFGVLKEVGLTPVLCIGETEAENEAGQTEAVCAKQLDAVLNTLGAKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIR 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEDO (Triosephosphate isomerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 81/203 (39.90%), Postives = 111/203 (54.68%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG +    E  KK  S L  + AE                     ++L  +   + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGNAALAQELFKKFASKLQNDSAEVVLCPPSIYLESVRQLLEDNKQALDGALVRMGAQNVSQHDFGAYTGEISGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 74/193 (38.34%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            V GNWK NGT E V  ++  +  A                        +  +   + AQ+      GAFTGE S  M+      + ++GHSERR   NE++  V  K     + GL  + C+GETLE+RE+  T  VV  Q KA+ +   I   +N V+AYEPVWAIGTGKVA+  QAQ+VHA +R WL   S
Sbjct:    6 VMGNWKLNGTKESVSALIKGIEAAADAAKNVEVAVCPPTIFIEQVANLVANNSIELGAQDVSTNISGAFTGETSPVMVKEFGAKYSLVGHSERRQYHNETDAVVAAKFVAIQANGLVPVLCIGETLEERETDKTFNVVETQLKAVIDVSGIDALENAVIAYEPVWAIGTGKVASSEQAQDVHAHIRTWLAEQS 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_AZOSB (Triosephosphate isomerase OS=Azoarcus sp. (strain BH72) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 76/188 (40.43%), Postives = 102/188 (54.26%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            + GNWK NG+  +   ++  L  AE                       +  S   + AQ+    + GA+TGEVSA MLV     +VI+GHSERRAL  +S+  VG K A AL+ GL  I CVGETL +RE G   AV+  Q +A+A+ +       +V+AYEPVWAIGTG+ ATP Q  + H  +R W
Sbjct:    6 IAGNWKLNGSLAKNAALIDELRRAEMHCVVCVPYPYLAQAQAL-----VAGSLIELGAQDVSEYEQGAYTGEVSAAMLVEFGCRYVIVGHSERRALFGDSDQVVGRKAASALAAGLTPIVCVGETLAERELGEVEAVIRRQLQAVADCVGGEALPTLVVAYEPVWAIGTGRSATPEQVAQTHGFIRAW 188          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPW (Triosephosphate isomerase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 80/203 (39.41%), Postives = 110/203 (54.19%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  + L  + AE                     ++L      +  QN      GA+TGE+S +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAQLAQELFKKFATKLQNDSAEVVLCPPSIYLESVRQLLDENKEALNGCLVRMGTQNVSQHDFGAYTGEISGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PHOLL (Triosephosphate isomerase OS=Photorhabdus luminescens subsp. laumondii GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 72/186 (38.71%), Postives = 104/186 (55.91%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            V GNWK NG++  V ++++ L +                       ++L  S   + AQ+  V   GAFTGE SA ML ++   ++I+GHSERR    ES++F+  K A    +GL  + C+GET ++ E+G T +V A Q  A+     ++ +   V+AYEPVWAIGTGK ATPAQAQ VH  +R
Sbjct:    6 VMGNWKLNGSTHMVNELITGLRQELSSVTGCDVAIAPPALYLSQAKQALAGSRIALGAQDVDVNLSGAFTGETSATMLKDIGAEYIIIGHSERRTYHQESDEFIAKKFAILKQQGLIPVLCIGETEQENEAGQTESVCARQIDAVLNTLGVAAFQGAVIAYEPVWAIGTGKSATPAQAQAVHKFIR 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ACTPJ (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 77/194 (39.69%), Postives = 109/194 (56.19%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            MAR+  V GNWK NG+    K++++ L +AE                     ++ L     +A  AQN  V   GAFTG++S EML +    ++I+GHSERR    E + F+  K A   + GL  + C+GET  + E+G T AV A+Q  A+ +   +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIAGL-KAELADVKGCDVAIAPPVMYLAEAEAALAGQSVIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIR 193          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP7 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 77/194 (39.69%), Postives = 109/194 (56.19%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            MAR+  V GNWK NG+    K++++ L +AE                     ++ L     +A  AQN  V   GAFTG++S EML +    ++I+GHSERR    E + F+  K A   + GL  + C+GET  + E+G T AV A+Q  A+ +   +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIAGL-KAELADVKGCDVAIAPPVMYLAEAEAALAGQSVIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIR 193          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP2 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 77/194 (39.69%), Postives = 109/194 (56.19%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            MAR+  V GNWK NG+    K++++ L +AE                     ++ L     +A  AQN  V   GAFTG++S EML +    ++I+GHSERR    E + F+  K A   + GL  + C+GET  + E+G T AV A+Q  A+ +   +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R
Sbjct:    1 MARRPLVMGNWKLNGSKAFTKELIAGL-KAELADVKGCDVAIAPPVMYLAEAEAALAGQSVIALGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIR 193          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEP12.064e-3039.79Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_YERE82.218e-3039.25Triosephosphate isomerase OS=Yersinia enterocoliti... [more]
TPIS_SHEDO2.896e-3039.90Triosephosphate isomerase OS=Shewanella denitrific... [more]
TPIS_PSYIN2.896e-3038.34Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_AZOSB2.896e-3040.43Triosephosphate isomerase OS=Azoarcus sp. (strain ... [more]
TPIS_SHEPW3.783e-3039.41Triosephosphate isomerase OS=Shewanella piezotoler... [more]
TPIS_PHOLL3.783e-3038.71Triosephosphate isomerase OS=Photorhabdus luminesc... [more]
TPIS_ACTPJ3.783e-3039.69Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP73.783e-3039.69Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP23.783e-3039.69Triosephosphate isomerase OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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