FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_THIDA (Triosephosphate isomerase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30
Identity = 83/190 (43.68%), Postives = 104/190 (54.74%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            RK  V GNWK +G+  E   +++ L  A                       +L  S     AQN      GAFTGEVSA ML++    +VI+GHSERR+L  ES+  V  K   A + GL  I CVGE+L +RESG T  VVA Q  A+  A  I++    V+AYEPVWAIGTGK A+P QAQ VHA +R
Sbjct:    2 RKKLVAGNWKMHGSLAENAALLAALKPA---LQGIEAAVCVPFPYLAQVQTALAGSSLAWGAQNVSEHGKGAFTGEVSASMLLDFGCKYVIVGHSERRSLYGESDALVAAKYMAAQAAGLTPILCVGESLAERESGVTEQVVARQLDAVVAAAGIASLARAVVAYEPVWAIGTGKTASPEQAQAVHAFIR 188          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHESH (Triosephosphate isomerase OS=Shewanella sediminis (strain HAW-EB3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30
Identity = 81/203 (39.90%), Postives = 109/203 (53.69%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTLNE--AEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E   K  + L +  AE                      +L      + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAQLALELFNKFATKLQDDSAEVVLCPPSIYLESVRQQLDANKDALNGCLVRMGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTH (Triosephosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30
Identity = 80/198 (40.40%), Postives = 104/198 (52.53%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            M+RK    GNWK N T +E  + V  L +                       ++   S+  VAAQN    + GAFTGEVS  ML  L + +VI+GHSERR    E+++ V  KV  A   GLK I CVGE+L QRE G T  +V  Q K     +S       V+AYEP+WAIGTGK AT  QA+EV   +R+ +K +
Sbjct:    1 MSRKVIAAGNWKMNKTPKEAVEFVQAL-KGRVADADTEVVVGVPFVCLPGVVEAAKGSNIKVAAQNMHWEEKGAFTGEVSGPMLAELGVDYVIIGHSERRQYFGETDETVNKKVHAAFKYGLKPIICVGESLTQREQGVTAELVRYQVKIALLGLSAEQVKEAVIAYEPIWAIGTGKTATNEQAEEVCGIIRECIKEL 197          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_THEP3 (Triosephosphate isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 76/196 (38.78%), Postives = 107/196 (54.59%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            R+  + GNWK + T  E  K+V  L   +                     K +  ++  + AQ+ +  + GA+TGE+S  ML  + + +V++GHSERR    E+++ V  KV  ALS GL  I CVGE+L QRE G T  VV  QTK   + +S+ D  NVV+AYEP+WAIGTGK AT   A EV   LR  + ++
Sbjct:    2 RRPIIAGNWKMHMTPSEAVKLVEELIP-QVKDAKAEVVVIPPFVDLTEVNKVIQGTNILLGAQDMFWEEKGAYTGEISPLMLKEIGVKYVVIGHSERRQYFGETDEMVNKKVLSALSHGLSPIVCVGESLSQREEGKTFEVVLNQTKEALKGVSHDDIVNVVIAYEPIWAIGTGKTATAKDANEVIKALRNTIASL 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEAM (Triosephosphate isomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30
Identity = 80/203 (39.41%), Postives = 110/203 (54.19%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTL--NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK    L  + AE                     ++L      + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +R+ L  +S
Sbjct:    4 RRPMVAGNWKMNGSAALAQELFKKFAVKLQNDSAEVVLCPPTIYLESVRQLLEANKEALNGCLVRMGAQNLSQHDFGAYTGEISGQMLKDSGCRYVIVGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRRRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PROVI (Triosephosphate isomerase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30
Identity = 76/189 (40.21%), Postives = 105/189 (55.56%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEA-EXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            R+  V GNWK N T  E  ++ S +  A                       +++  S+  + AQNC     GAFTGEVS  ML  L   +VI+GHSERR    E++  V  ++   L+ G+K I CVGETLE+RESG+  AVV+ Q     + + +  ++V+AYEPVWAIGTG+ A+  QAQEVH  +R
Sbjct:    2 RRKIVVGNWKMNKTVAESTELASAVVAALGSDCSACEAGIAPTYPALDSVGRTIKGSEVLLVAQNCHYEDDGAFTGEVSTGMLNALGCSYVIIGHSERRQYFGETDATVNLRIKKVLAAGMKAILCVGETLEERESGAFEAVVSTQVTGGLQGVVDISDIVIAYEPVWAIGTGRTASSEQAQEVHKIIR 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB8 (Triosephosphate isomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30
Identity = 77/196 (39.29%), Postives = 105/196 (53.57%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            RK  + GNWK N T +E  K+V  L                         K++  S+  VAAQN    + GAFTGEV+  ML  + I +V+LGHSERR   NE+++ +  KV  A    +  I C GE+LEQRE+G+T  V+  Q KA    ++N   + +V+AYEP+WAIGTGK AT  QA E    +R  +  M
Sbjct:    2 RKAIIAGNWKMNKTIDEAVKMVEELKPL-VKDATCDVVVCPTFVCLDAVKKAVAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIDYVVLGHSERREYFNETDEALNKKVKKAFEHNITPILCCGESLEQRENGTTNKVIEAQIKADIAGLTNEQVEKLVIAYEPIWAIGTGKTATDEQANETIKAIRAMVAEM 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SHEHH (Triosephosphate isomerase OS=Shewanella halifaxensis (strain HAW-EB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 80/203 (39.41%), Postives = 110/203 (54.19%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTS----EEVKKIVSTLNE--AEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            R+  V GNWK NG++    E  KK  + L +  AE                     ++L      + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L  +S
Sbjct:    4 RRPMVAGNWKMNGSAQLAQELFKKFATKLQDDSAEVVLCPPSIYLESVRQLLDENKEALNGCLVRMGAQNLSQHDFGAYTGEISGQMLKDSGCRYVIIGHSERRRMYGETSVIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVS 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 72/186 (38.71%), Postives = 101/186 (54.30%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            V GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    +GL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIR 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SALSV (Triosephosphate isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 72/186 (38.71%), Postives = 101/186 (54.30%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            V GNWK NG+   V ++V+ L +                       ++   S   + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    +GL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIR 191          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_THIDA4.941e-3043.68Triosephosphate isomerase OS=Thiobacillus denitrif... [more]
TPIS_SHESH4.941e-3039.90Triosephosphate isomerase OS=Shewanella sediminis ... [more]
TPIS_CLOTH4.941e-3040.40Triosephosphate isomerase OS=Clostridium thermocel... [more]
TPIS_THEP36.453e-3038.78Triosephosphate isomerase OS=Thermoanaerobacter ps... [more]
TPIS_SHEAM8.427e-3039.41Triosephosphate isomerase OS=Shewanella amazonensi... [more]
TPIS_PROVI8.427e-3040.21Triosephosphate isomerase OS=Prosthecochloris vibr... [more]
TPIS_CLOB88.427e-3039.29Triosephosphate isomerase OS=Clostridium beijerinc... [more]
TPIS_SHEHH1.101e-2939.41Triosephosphate isomerase OS=Shewanella halifaxens... [more]
TPIS_SALTY1.101e-2938.71Triosephosphate isomerase OS=Salmonella typhimuriu... [more]
TPIS_SALSV1.101e-2938.71Triosephosphate isomerase OS=Salmonella schwarzeng... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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