FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 5.554e-51
Identity = 96/192 (50.00%), Postives = 127/192 (66.15%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            RKFFVGGNWK NG  + + +++ TLN A+                     K  +   F VAAQNC+    GAFTGE+S  M+ +  + WVILGHSERR +  ES++ +G KV++ALS GL V+AC+GE L++RE+G T  VV E T+ IA+ + +W  VVLAYEPVWAIGTGK A+P Q+QE+H +LRKWLK
Sbjct:    3 RKFFVGGNWKMNGDKKSLGELIQTLNAAKVPFTGEIVCAPPEAYLDFARLK--VDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLK 192          

HSP 2 Score: 27.335 bits (59), Expect = 5.554e-51
Identity = 13/21 (61.90%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            +NVS  VA S RIIYGG   G
Sbjct:  193 ENVSETVADSVRIIYGGSVTG 213          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.603e-50
Identity = 100/193 (51.81%), Postives = 125/193 (64.77%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            +RKFFVGGNWK NG  E + +++ TLN A                      +S L     VAAQNC+    GAFTGE+S  M+ +  I WVILGHSERR +  ES++ +G KVA+ L   L VIAC+GE LE+RE+G+T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK A+P QAQEVH +LR WL+
Sbjct:    3 SRKFFVGGNWKMNGDKESLGELIMTLNTASLNDETDVVCGAPSIYLDYA--RSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLR 193          

HSP 2 Score: 26.1794 bits (56), Expect = 1.603e-50
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            NVS  VA S RIIYGG   G
Sbjct:  195 NVSDAVADSVRIIYGGSVTG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.603e-50
Identity = 100/193 (51.81%), Postives = 126/193 (65.28%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            M+RKF VGGNWK NG  + + +I  TL+ A                      ++LL  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL+ GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTGK ATP QAQEVHA LR+WL
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWL 191          

HSP 2 Score: 27.7202 bits (60), Expect = 1.603e-50
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            DN+S EV+AS RI YGG
Sbjct:  193 DNISKEVSASLRIQYGG 209          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.603e-50
Identity = 100/193 (51.81%), Postives = 126/193 (65.28%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            M+RKF VGGNWK NG  + + +I  TL+ A                      ++LL  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL+ GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTGK ATP QAQEVHA LR+WL
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWL 191          

HSP 2 Score: 27.7202 bits (60), Expect = 1.603e-50
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            DN+S EV+AS RI YGG
Sbjct:  193 DNISKEVSASLRIQYGG 209          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.724e-50
Identity = 98/192 (51.04%), Postives = 126/192 (65.62%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            R+FFVGGNWK NG  E +++++STLN A                      +S L S   VAAQNC+    GAFTGE+S  M+ +    WVILGHSERR +  E+++ +G KVA+AL   L VIAC+GE LE+RE+G+T  V+  QT+ IAE + +W+ VVLAYEPVWAIGTGK ATP QAQEVH +LR W +
Sbjct:    4 RRFFVGGNWKMNGNKESLEELMSTLNTASLHEDTEVVCAAPSIYLDFA--RSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKDCGADWVILGHSERRHVFGENDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFR 193          

HSP 2 Score: 25.7942 bits (55), Expect = 2.724e-50
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGG 705
            N+S EV+ S RIIYGG
Sbjct:  195 NISEEVSDSLRIIYGG 210          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 195.282 bits (495), Expect = 3.550e-50
Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            MARKFFVGGN+K NG+ E +K I+  LN  +                     + + + D  V AQN + +K GA+TGE SA+ L++  I + + GHSERR +  ES++FV DK  +AL +GL V+AC+GETL +RE+  T+ VV  Q  AIA+K+ NW  +V+AYEPVWAIGTGK ATP QAQEVHAE+RKW
Sbjct:    1 MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQV-KKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKW 191          

HSP 2 Score: 24.6386 bits (52), Expect = 3.550e-50
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            + + A VA   R+IYGG  NG
Sbjct:  194 NKLGASVAEGLRVIYGGSVNG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.298e-50
Identity = 99/194 (51.03%), Postives = 125/194 (64.43%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            M RKF VGGNWK NG   ++ +IV+ L +                       K+++  +  VAAQNCW    GAFTGE+S  M+ ++ + WVILGHSERR +  E ++ V +KVA+AL  GLKVIAC+GETLE+RESG T  VV  Q KA+   I + W+N+VLAYEPVWAIGTGK ATP QAQ+VH  LR WL
Sbjct:    1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYV--KTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWL 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 4.628e-50
Identity = 99/193 (51.30%), Postives = 126/193 (65.28%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            M+RKF VGGNWK NG  + + +I  TL+ A                      ++LL  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL+ GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTG+ ATP QAQEVHA LR+WL
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWL 191          

HSP 2 Score: 27.7202 bits (60), Expect = 4.628e-50
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            DN+S EV+AS RI YGG
Sbjct:  193 DNISKEVSASLRIQYGG 209          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.614e-50
Identity = 102/207 (49.28%), Postives = 132/207 (63.77%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSVLKLQHQL 688
            +RKFFVGGNWK NG+  + K ++ +L+EA                      +  L  + HVAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR++ NES++ V +KV +AL+ GL V+AC+GETL +RESG T  V   Q  AIA KI +   W  VV+AYEPVWAIGTGKVA+P QAQEVH  LRKW KT +   +  Q+
Sbjct:    4 SRKFFVGGNWKMNGSRADNKVLIHSLSEAHFCGDTEILIAAPFVYLNEV--RQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIFNESDELVAEKVQHALAEGLSVVACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQI 208          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.633e-49
Identity = 101/197 (51.27%), Postives = 127/197 (64.47%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            +RKFFVGGNWK NG+ ++  K++  L+EA                      +  L+ + HVAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR +  ES++ + +KV +AL+ GL VIAC+GETL +RES  T  V   Q KAIA KI +   W  VV+AYEPVWAIGTGKVATP QAQEVH  LRKW KT
Sbjct:    4 SRKFFVGGNWKMNGSRDDNDKLLKLLSEAHFDDNTEVLIAPPSVFLHEI--RKSLKKEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKT 198          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_LATCH5.554e-5150.00Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPISA_DANRE1.603e-5051.81Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_DROYA1.603e-5051.81Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI1.603e-5051.81Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_ORYLA2.724e-5051.04Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_SCHPO3.550e-5049.48Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_BOMMO4.298e-5051.03Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_DROME4.628e-5051.30Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_SCHJA5.614e-5049.28Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_SCHMA1.633e-4951.27Triosephosphate isomerase OS=Schistosoma mansoni G... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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