FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.741e-49
Identity = 96/194 (49.48%), Postives = 128/194 (65.98%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            MARKFFVGGN+K NGT +++K IV  LN A+                     ++L + +  VAAQN + +  GAFTGE+SA  L++L + WVILGHSERR  L ES++F+  K  YAL  G+ VI C GE+ + R++G T+  V  Q  A+A++I++W NVV+AYEP+WAIGTG VAT  QAQEVHA +R WLK
Sbjct:    1 MARKFFVGGNFKMNGTRKDLKAIVDNLNNAQLDPNAEVVIAPPALYLDFVK-QNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLK 193          

HSP 2 Score: 26.9498 bits (58), Expect = 1.741e-49
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCN 714
            NVS +VA  TRI+YGG  N
Sbjct:  195 NVSDKVAEETRILYGGSVN 213          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.746e-49
Identity = 91/140 (65.00%), Postives = 110/140 (78.57%), Query Frame = 2
Query:  230 KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES++ + DKVA+AL+ GLKVIAC+GETL++RE+G T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK ATP QAQEVH  LRKW
Sbjct:   33 RSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKW 172          

HSP 2 Score: 28.8758 bits (63), Expect = 1.746e-49
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            DNVSA+V+AS RI YGG
Sbjct:  175 DNVSADVSASIRIQYGG 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.058e-47
Identity = 89/140 (63.57%), Postives = 108/140 (77.14%), Query Frame = 2
Query:  230 KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES + + DK+ +AL+ GLKVIAC+GETL++RE+  T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW
Sbjct:   33 RSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKW 172          

HSP 2 Score: 25.0238 bits (53), Expect = 2.058e-47
Identity = 10/17 (58.82%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            +NVSA+V+++ RI YGG
Sbjct:  175 ENVSADVSSAIRIQYGG 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.496e-47
Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2
Query:  230 KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            +SLL     VAAQNC+    GAFTGE+S  ML +L + WVILGHSERRA+  E+++ + +KVA+AL  GLKVIAC+GETL++RE+G T AV   QTKAIA ++ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW
Sbjct:   33 RSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKW 172          

HSP 2 Score: 23.8682 bits (50), Expect = 3.496e-47
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            +NVSA+V+ + RI YGG
Sbjct:  175 ENVSADVSNAIRIQYGG 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.311e-46
Identity = 93/196 (47.45%), Postives = 121/196 (61.73%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            M RKFFVGGN+K NG +E    I+  LN A                      + +   +  VAAQN + +  GAFTGE+S + L   +I W ILGHSERR +L E+++F+  K   A+  GL+VI C+GETLE+RE+  T+ VV  Q  A A+++S   W  VV+AYEPVWAIGTGKVAT  QAQEVH+ +RKWLK
Sbjct:    1 MPRKFFVGGNFKMNGNAESTTSIIKNLNSANLDKSVEVVVSPPALYLLQA--REVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLK 194          

HSP 2 Score: 28.1054 bits (61), Expect = 1.311e-46
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            D +SAE A +TRIIYGG
Sbjct:  195 DAISAEAAENTRIIYGG 211          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.226e-46
Identity = 91/195 (46.67%), Postives = 124/195 (63.59%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            M R+FFVGGN+K NGT+E +  I+  LNEA+                      +  +    V++QN + +  GAFTGE+S   L +  IPW I+GHSERR +L E+++F+  KV  A+  G+ VI C+GETLE+RE+  T+ VV +Q  A A++++   W  VV+AYEPVWAIGTGKVAT  QAQEVHA +RKWL
Sbjct:    1 MPRQFFVGGNFKMNGTAESITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWL 195          

HSP 2 Score: 25.0238 bits (53), Expect = 2.226e-46
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            D +S E + +TRIIYGG
Sbjct:  197 DAISPEASENTRIIYGG 213          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.902e-46
Identity = 89/193 (46.11%), Postives = 122/193 (63.21%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MAR+FFVGGN+K NGT E V KIV  LN+AE                     ++  ++   V+AQNC+ +  GA+TGE+S E + +L   W + GHSERR ++ ES+DF+  K  +AL +GL VI C+GETLE+R++  T+ V A Q  A+A  +S+W  +V+AYEPVWAIGTG  ATP  AQE H  +R+ L
Sbjct:    1 MARQFFVGGNFKMNGTRESVSKIVDGLNKAELPSNVEVVIAPPAPYIALAVNENKQKT-IEVSAQNCFDKASGAYTGEISPEQIKDLGATWTLTGHSERRTIIKESDDFIASKTKFALDQGLSVILCIGETLEERKANVTLDVCARQLDAVARVVSDWSKIVVAYEPVWAIGTGLAATPEDAQETHKAIREHL 192          

HSP 2 Score: 26.5646 bits (57), Expect = 2.902e-46
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            ++ A+ A  TRI+YGG  NG
Sbjct:  195 SIGADAAEKTRILYGGSVNG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 6.423e-46
Identity = 94/195 (48.21%), Postives = 124/195 (63.59%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            M RKFFVGGN+K NGT++ +  I++ LN A+                     + L      V+AQN + +  GAFTGE+S E L +  I W + GHSERR LL E ++FV  K   A++ GL VI C+GE+LE+RE+G T+ VV  Q  A+AE++S   W+ VV+AYEP+WAIGTGKVAT  QAQEVHA +RKWL
Sbjct:    1 MPRKFFVGGNFKMNGTAKSITHIITNLNSAKLDPSTEIVIAPPAIYLVLA--RQLANGQVAVSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWL 193          

HSP 2 Score: 22.7126 bits (47), Expect = 6.423e-46
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            + +S E A + R+IYGG
Sbjct:  195 EKISPEAAENIRVIYGG 211          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.155e-45
Identity = 94/183 (51.37%), Postives = 116/183 (63.39%), Query Frame = 2
Query:  113 NGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI-SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            NG  ++V  IV TL +                       +S++     VAAQNCW    GAFTGE+S  M+ ++   WVILGHSERR +  E +D V +KVA+AL  GLKVIAC+GETLE+RE+G T  VV  QTKA+   I +NW NVVLAYEPVWAIGTGK A+P QAQ+VHA LR WL +
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPAIYLAYV--QSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSS 182          

HSP 2 Score: 24.6386 bits (52), Expect = 3.155e-45
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGG 705
            N S +VAAS RI YGG
Sbjct:  183 NASPDVAASVRIQYGG 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 6.965e-45
Identity = 93/198 (46.97%), Postives = 124/198 (62.63%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTS-EEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            M R FFVGGNWK N TS    K +V  LN+A+                     + +      VAAQN + ++ GAFTGE+S + + +  IP+VILGHSERR L +E+++ V  K   AL  GLKVI C+GETL++RE G T AV  EQ  A+ +++   +W N+V+AYEPVWAIGTGKVAT +QAQE H ++RK+L T
Sbjct:    1 MTRSFFVGGNWKLNPTSLSAAKALVEALNKADLDPSTEVVVAPPALYLLPI--QEIAGKAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLAT 196          

HSP 2 Score: 26.1794 bits (56), Expect = 6.965e-45
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  661 VSAEVAASTRIIYGGFCN 714
            VS +VA+ TR+IYGG  N
Sbjct:  198 VSPKVASETRVIYGGSVN 215          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_NEUCR1.741e-4949.48Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_AEDTO1.746e-4965.00Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_CULPI2.058e-4763.57Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_ANOME3.496e-4763.57Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_EMENI1.311e-4647.45Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_ASPOR2.226e-4646.67Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_DEBHA2.902e-4646.11Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_PARBA6.423e-4648.21Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_HELVI3.155e-4551.37Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_COPC76.965e-4546.97Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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