FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STAAB (Triosephosphate isomerase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.028e-25
Identity = 69/195 (35.38%), Postives = 96/195 (49.23%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEA--EXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            + GNWK N T +E K  V+ L                           K        + AQN +    GAFTGE S   L +L + +V++GHSERR L +E+++ +  K       G+  I CVGET E+RESG    VV EQ K     +S     +VV+AYEP+WAIGTGK +T   A E+   +R+ +  +S
Sbjct:    6 IAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICGPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEEQLKSVVIAYEPIWAIGTGKSSTSEDANEMCTFVRQTIADLS 200          

HSP 2 Score: 21.557 bits (44), Expect = 1.028e-25
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            D  S EV+ +TRI YGG
Sbjct:  198 DLSSKEVSEATRIQYGG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRPF (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 68/192 (35.42%), Postives = 94/192 (48.96%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            M RK  + GNWK N   +E K  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R
Sbjct:    1 MLRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVR 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRA5 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype V GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            M+RK F+ GNWK N   EE K  +  +                         ++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVR 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRA3 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype III GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            M+RK F+ GNWK N   EE K  +  +                         ++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVR 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRA1 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype Ia GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            M+RK F+ GNWK N   EE K  +  +                         ++   S+  +AAQN +    GAFTGE S ++L  +   +V++GHSERR   +E++  +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++V+AYEP+WAIGTGK AT   AQ +   +R
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSELVEAGIAAPALTLSTVLEAAKGSELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVR 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DESVV (Triosephosphate isomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 59/138 (42.75%), Postives = 91/138 (65.94%), Query Frame = 2
Query:  251 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTK-AIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            F +  Q+ +    GA+TGE++  ML++    WV+ GHSERR +L E ++ V  K A++L  GL+V+ C+GE L++RE+G    V+A Q +  +A+  + +   ++V+AYEPVWAIGTGKVA PA+  E HA +R  L+
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLE 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DESVH (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 59/138 (42.75%), Postives = 91/138 (65.94%), Query Frame = 2
Query:  251 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTK-AIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            F +  Q+ +    GA+TGE++  ML++    WV+ GHSERR +L E ++ V  K A++L  GL+V+ C+GE L++RE+G    V+A Q +  +A+  + +   ++V+AYEPVWAIGTGKVA PA+  E HA +R  L+
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLE 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BORHD (Triosephosphate isomerase OS=Borrelia hermsii (strain DAH) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 72/201 (35.82%), Postives = 103/201 (51.24%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEV----KKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLK-VIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            RK F+ GNWK + TS E     K+IV  +                         K    S+  + AQN      GA T E+S  ML+   + +VILGHSE R  L ++++ +  K+   L    K +I C+GETL +RE+  T+ VV  Q +     +S  D   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++++
Sbjct:    2 RKMFLAGNWKMHYTSVEAAGVAKQIVDGVQNINDDVVIMITPAFTSLCKVCEVTKG---SNVLLGAQNMSYENSGARTSEISPSMLLEFGVDYVILGHSECRTYLGDTDEVINKKILAGLKHPFKYLILCIGETLSERENNKTLDVVLNQIRRGLMSVSESDLKRIILAYEPVWAIGTGKTATKEEAQEVHRAIRLEIESL 199          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRP6 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M6 GN=tpiA PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 67/192 (34.90%), Postives = 95/192 (49.48%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            M+RK  + GNWK N   +E +  V  +                         ++   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R
Sbjct:    1 MSRKPIIAGNWKMNKNPQEARAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVR 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 66/190 (34.74%), Postives = 96/190 (50.53%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            M+RK F+ GNWK N   EE K  V  +                          +   S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++   + V+AYEP+WAIGTGK A+   AQ++
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPAVDLTAVLAAAKGSNLKVAAQNCYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---STVIAYEPIWAIGTGKSASQDDAQKM 187          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STAAB1.028e-2535.38Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_STRPF1.259e-2535.42Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRA51.259e-2534.38Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA31.259e-2534.38Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA11.259e-2534.38Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_DESVV1.259e-2542.75Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_DESVH1.259e-2542.75Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_BORHD1.259e-2535.82Triosephosphate isomerase OS=Borrelia hermsii (str... [more]
TPIS_STRP61.645e-2534.90Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRGC1.645e-2534.74Triosephosphate isomerase OS=Streptococcus gordoni... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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