FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_FRATT (Triosephosphate isomerase OS=Francisella tularensis subsp. tularensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 68/187 (36.36%), Postives = 99/187 (52.94%), Query Frame = 2
Query:   98 GNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            GNWK NG S  +K++ S +++ +                      S L     V  QN      GA+TGE+SA ML ++   ++++GHSERR+L  ES++ V  K+   +   +  + C+GE+L+ R+SG    V+A Q   I E +S      VV+AYEPVWAIGTG VA+  Q QE H  +R  L
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVI-SQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLL 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_FRAT1 (Triosephosphate isomerase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 68/187 (36.36%), Postives = 99/187 (52.94%), Query Frame = 2
Query:   98 GNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            GNWK NG S  +K++ S +++ +                      S L     V  QN      GA+TGE+SA ML ++   ++++GHSERR+L  ES++ V  K+   +   +  + C+GE+L+ R+SG    V+A Q   I E +S      VV+AYEPVWAIGTG VA+  Q QE H  +R  L
Sbjct:    7 GNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVI-SQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLL 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DESVM (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 58/137 (42.34%), Postives = 87/137 (63.50%), Query Frame = 2
Query:  251 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            + V  Q+ +    GA+TGE+S  ML++    WV+ GHSERR ++ ES++ VG K A++++ GLKV+ C+GET+E+RE+G    V+  Q +     +        + +AYEPVWAIGTGKVA P +  E HA +R+ L
Sbjct:   61 YSVGGQDVYPAAEGAYTGEISPGMLMDCGCAWVLTGHSERRHVIGESDELVGAKTAFSINAGLKVVLCIGETIEEREAGRLGEVLERQLETGLAGVKGDAVPAAIAVAYEPVWAIGTGKVAGPPEIVEAHALVRQLL 197          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BACP2 (Triosephosphate isomerase OS=Bacillus pumilus (strain SAFR-032) GN=tpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 68/191 (35.60%), Postives = 94/191 (49.21%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK N T  E    V  +  +                           +D  + AQN    + GAFTGE+S   L +L I + ++GHSERR    E+++ V  K   A   G+  I CVGETLE+RE+G T  +VA+Q K      +       V+AYEP+WAIGTGK +T   A +V A +R+
Sbjct:    2 RKPIIAGNWKMNKTLGEAVSFVEEVKSSIPYPDKVEAIVCAPALFLEKLNSLSNGTDLKIGAQNMHFEENGAFTGEISPAALKDLGIGYSVIGHSERREFFAETDETVNKKAHAAFKHGIVPIICVGETLEEREAGKTNELVADQVKKALAGFTTQQVAESVIAYEPIWAIGTGKSSTAKDANDVCAHIRQ 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS1_LISMF (Triosephosphate isomerase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 66/190 (34.74%), Postives = 96/190 (50.53%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV--VLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            RK  + GNWK N T+ +  +    +                         +    ++  VAAQNC+    GAFTGE+S   L +L + +VI+GHSERR   +E+++ +  K       G+  I C GETL+QRE+G T   V  Q +A    ++    +  V+AYEP+WAIGTGK +T A A E  A +R
Sbjct:    2 RKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTNLRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIR 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS1_LISIN (Triosephosphate isomerase 1 OS=Listeria innocua GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 66/190 (34.74%), Postives = 96/190 (50.53%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV--VLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            RK  + GNWK N T+ +  +    +                         +    ++  VAAQNC+    GAFTGE+S   L +L + +VI+GHSERR   +E+++ +  K       G+  I C GETL+QRE+G T   V  Q +A    ++    +  V+AYEP+WAIGTGK +T A A E  A +R
Sbjct:    2 RKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTNLRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIR 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_RHOSR (Triosephosphate isomerase OS=Rhodococcus sp. (strain RHA1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 76/199 (38.19%), Postives = 99/199 (49.75%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLN-EAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MARK  + GNWK N    E   +V  +                          ++L+  D       AQ+      GA+TGE+S  ML  L   +V++GHSERR L  E ND V  K   AL  G+  I C+GE L+ RE+G  V+   EQ +     +S  D   VV+AYEPVWAIGTG+VA+ A AQEV A +R  L
Sbjct:    1 MARKPLIAGNWKMNLNHLEAIALVQKIAFSLPAKYFDKVDVTVIPPFTDIRSVQTLVEGDKLLLTYGAQDVSAHDSGAYTGEISGSMLAKLGCTFVVVGHSERRTLHCEDNDTVLAKTKAALKNGITPIVCIGEGLDVREAGEHVSYNVEQLRGSLAGLSGEDIAKVVIAYEPVWAIGTGRVASAANAQEVCAAIRATL 199          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTU (Triosephosphate isomerase OS=Mycobacterium tuberculosis GN=tpiA PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 78/206 (37.86%), Postives = 106/206 (51.46%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            M+RK  + GNWK N    E    V+KI  +L +                           +      AQ+      GA+TG+VS   L  L   +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ RE+G+ VA   EQ +      +AE+I    +VV+AYEPVWAIGTG+VA+ A AQEV A +RK L +++
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIG---SVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLA 203          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTA (Triosephosphate isomerase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 78/206 (37.86%), Postives = 106/206 (51.46%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            M+RK  + GNWK N    E    V+KI  +L +                           +      AQ+      GA+TG+VS   L  L   +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ RE+G+ VA   EQ +      +AE+I    +VV+AYEPVWAIGTG+VA+ A AQEV A +RK L +++
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIG---SVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLA 203          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBO (Triosephosphate isomerase OS=Mycobacterium bovis GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 78/206 (37.86%), Postives = 106/206 (51.46%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            M+RK  + GNWK N    E    V+KI  +L +                           +      AQ+      GA+TG+VS   L  L   +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ RE+G+ VA   EQ +      +AE+I    +VV+AYEPVWAIGTG+VA+ A AQEV A +RK L +++
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIG---SVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLA 203          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_FRATT1.645e-2536.36Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRAT11.645e-2536.36Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_DESVM1.645e-2542.34Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_BACP21.645e-2535.60Triosephosphate isomerase OS=Bacillus pumilus (str... [more]
TPIS1_LISMF1.645e-2534.74Triosephosphate isomerase 1 OS=Listeria monocytoge... [more]
TPIS1_LISIN1.645e-2534.74Triosephosphate isomerase 1 OS=Listeria innocua GN... [more]
TPIS_RHOSR2.148e-2538.19Triosephosphate isomerase OS=Rhodococcus sp. (stra... [more]
TPIS_MYCTU2.148e-2537.86Triosephosphate isomerase OS=Mycobacterium tubercu... [more]
TPIS_MYCTA2.148e-2537.86Triosephosphate isomerase OS=Mycobacterium tubercu... [more]
TPIS_MYCBO2.148e-2537.86Triosephosphate isomerase OS=Mycobacterium bovis G... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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