FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BACME (Triosephosphate isomerase OS=Bacillus megaterium GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 72/190 (37.89%), Postives = 92/190 (48.42%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQT-KAIAEKISNW-DNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            RK  + GNWK N    E    V  +  A                      ++   +D  + AQN    + GAFTGEVS   L +L + +VILGHSERR +  E+++ V  K   A   GL  I C GET E+ E   T  VVA Q  KA+A          V+AYEP+WAIGTGK +T   A EV A +R
Sbjct:    2 RKPIIAGNWKMNKVLSEATSFVEEVKGAVPSPESVDSVVCAPALFLDRLVEATKGTDLKIGAQNMHFEENGAFTGEVSPVALADLGVNYVILGHSERREMFAETDETVNQKTIAAFKHGLTPIVCCGETNEEYEQDQTKTVVANQVQKALAGLTDEQVKQTVIAYEPIWAIGTGKSSTAEGANEVCAYIR 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ACIF2 (Triosephosphate isomerase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 67/192 (34.90%), Postives = 97/192 (50.52%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI---SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            R   V GNWK NG S +   +   +  A                      +    S      QN +    GA+TGE+S  ML ++   +V++GHSERR +  ES+  +  K+  AL  GL  + CVGET  +R  G T AV+  Q +A+   +   ++  N+++AYEPVWAIGTG  A+P QAQ VH  +R+
Sbjct:    2 RPTMVAGNWKMNGLSGDAVHLTQAILHAGLEPMRPEVVIFPPFTLLHAVSQEAKSSALRWGGQNLFWEASGAYTGEISGAMLRDMGCRYVLIGHSERRQIFAESDAQIVQKIKAALLSGLIPVVCVGETEAERAQGLTDAVLRRQLEAVLPLLNLEASQPNLIIAYEPVWAIGTGLSASPEQAQAVHVFIRE 193          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STAES (Triosephosphate isomerase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.951e-25
Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTL------NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            + GNWK N T +E K  V+ L       E E                        L+    + AQN +  + GA+TGE S   L  L + +V++GHSERR   +E+++ V  K     + G+  I CVGE+ E+RE+G    +V  Q K   E +S+     VV+AYEP+WAIGTGK +T   A E+ A +R+ L  +S
Sbjct:    6 IAGNWKMNKTVQEAKDFVNELPTLPDPKEVESVICAPTIQLDALVTAVKDGKAKGLK----IGAQNAYFEESGAYTGETSPVALSELGVKYVVIGHSERRDYFHETDEEVNKKAHAIFNHGMTPIICVGESDEEREAGKANKIVGNQVKKAVEGLSDDQLKEVVIAYEPIWAIGTGKSSTSEDANEMCAHVRQTLADLS 200          

HSP 2 Score: 22.3274 bits (46), Expect = 2.951e-25
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            D  S EVA +TRI YGG
Sbjct:  198 DLSSQEVADATRIQYGG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STAEQ (Triosephosphate isomerase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.951e-25
Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTL------NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            + GNWK N T +E K  V+ L       E E                        L+    + AQN +  + GA+TGE S   L  L + +V++GHSERR   +E+++ V  K     + G+  I CVGE+ E+RE+G    +V  Q K   E +S+     VV+AYEP+WAIGTGK +T   A E+ A +R+ L  +S
Sbjct:    6 IAGNWKMNKTVQEAKDFVNELPTLPDPKEVESVICAPTIQLDALVTAVKDGKAKGLK----IGAQNAYFEESGAYTGETSPVALSELGVKYVVIGHSERRDYFHETDEEVNKKAHAIFNHGMTPIICVGESDEEREAGKANKIVGNQVKKAVEGLSDDQLKEVVIAYEPIWAIGTGKSSTSEDANEMCAHVRQTLADLS 200          

HSP 2 Score: 22.3274 bits (46), Expect = 2.951e-25
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            D  S EVA +TRI YGG
Sbjct:  198 DLSSQEVADATRIQYGG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 67/191 (35.08%), Postives = 100/191 (52.36%), Query Frame = 2
Query:   83 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            K  + GNWK N T  + K+  S  N+                        +    +     +A QN    + GA+TGE+SA+ML++L++ + I+GHSERR    E++  V  K   A+   +  + CVGETLE+ E+  T  V+  Q K   + + +   V++AYEP+WAIGTGK ATP QAQ+V   +RK
Sbjct:    3 KTIIIGNWKMNKTFTQTKEFFSAFNQLYIENKNKINQNLDFAVALPAINVAAFSKNTTKLELAVQNMSQFEKGAYTGEISAQMLLDLNVKYAIIGHSERRQYFKETDLDVNAKTQQAIKNNIIPVVCVGETLEEYEAQKTSQVIEYQLKNSLKDV-DLSKVIVAYEPIWAIGTGKTATPEQAQQVCKFIRK 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DEHSC (Triosephosphate isomerase OS=Dehalococcoides sp. (strain CBDB1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 70/192 (36.46%), Postives = 101/192 (52.60%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R+  + GNWK N T  E   +V ++ + E                     K++L  S   + AQN + ++ GA+TGE+S  ML  L   +VI+GHSERRA   E+   V  K+  AL  GL  I CVGE  E+ E+G T  V+  Q K   + + N   +++AYEP+WAIGTGK AT ++A      +R+ L
Sbjct:    2 RQIIIAGNWKMNTTLSEACTLVQSM-KCELERIEGIEKIICPPFISLYPIKTILENSSIKLGAQNLFYQEKGAYTGEISPLMLKELC-QYVIIGHSERRAYFGETGQVVNQKIKAALQAGLLPIVCVGEKPEENENGQTRQVLETQLKEALDGL-NLSCIIIAYEPIWAIGTGKAATASEANSAIGYIRRVL 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DEHSB (Triosephosphate isomerase OS=Dehalococcoides sp. (strain BAV1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 70/192 (36.46%), Postives = 101/192 (52.60%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R+  + GNWK N T  E   +V ++ + E                     K++L  S   + AQN + ++ GA+TGE+S  ML  L   +VI+GHSERRA   E+   V  K+  AL  GL  I CVGE  E+ E+G T  V+  Q K   + + N   +++AYEP+WAIGTGK AT ++A      +R+ L
Sbjct:    2 RQIIIAGNWKMNTTLSEACTLVQSM-KCELERIEGIEKIICPPFISLYPIKTMLENSSIKLGAQNLFYQEKGAYTGEISPLMLKELC-QYVIIGHSERRAYFGETGQVVNQKIKAALQAGLLPIVCVGEKPEENENGQTRQVLETQLKEALDGL-NLSCIIIAYEPIWAIGTGKAATASEANSAIGYIRRVL 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BRASO (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain ORS278) GN=tpiA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 68/188 (36.17%), Postives = 95/188 (50.53%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            + GNWK NG      +  + L   AE                     K+       V AQ+C  +  GA TG++SAEML +     VI+GHSERRA   ES+  V  K   A   GL  I CVGET +QR++G T+ ++  Q      + S  DN+++AYEPVWAIGTG   T    +++H+ +R+ L
Sbjct:    9 IAGNWKMNGLKASAAEFEAMLAGAAEVTGKADLLVCPPATLLAAFAEKTRGGKAVAVGAQDCHAKASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDVVVHQKAEAAWRAGLVAIVCVGETQQQRDAGLTLEILRGQLTLSLPEGSRADNLIVAYEPVWAIGTGLTPTAGDVEQIHSFIRQLL 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BARHE (Triosephosphate isomerase OS=Bartonella henselae GN=tpiA PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 69/190 (36.32%), Postives = 91/190 (47.89%), Query Frame = 2
Query:   89 FVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHV--------AAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHA 634
            F+ GNWK NGT E       +L E                        +LL   F +          QNC     G +TG++SA ML       VI+GHSERR +  ES+  V  KV  A   GL  + CVGETLE+R+S   + V+  Q +      +  +N+++AYEPVWA+GTG  AT A   EVHA
Sbjct:    8 FIAGNWKMNGTGE-------SLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGGENILLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATSADVAEVHA 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_NOCFA (Triosephosphate isomerase OS=Nocardia farcinica GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.837e-25
Identity = 79/206 (38.35%), Postives = 104/206 (50.49%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            MARK  + GNWK N    E    V+KI   L E                       ++L+  D       AQ+  V + GA+TGE+SA ML  L   +V++GHSERR   +E +  V  K   AL  GL  I C+GE L  RE+G+ V    EQ +   + +S      VV+AYEPVWAIGTGKVA+ A AQEV   +R  L  ++
Sbjct:    1 MARKPLIAGNWKMNLNHLEAIALVQKIAFALPEK---YFEKVDVAVIPPFVDIRSVQTLVEGDKLLLTYGAQDVSVHESGAYTGEISASMLAKLGCTFVVVGHSERRQYHHEDDATVLGKAKKALEHGLTPIVCIGEGLNVREAGTHVEYNLEQLRGSLKGLSAEQIAKVVIAYEPVWAIGTGKVASAADAQEVCGAIRAELAELA 203          

HSP 2 Score: 23.483 bits (49), Expect = 3.837e-25
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  670 EVAASTRIIYGGFCN 714
            EVAA  R++YGG  N
Sbjct:  206 EVAAQVRVLYGGSVN 220          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACME2.805e-2537.89Triosephosphate isomerase OS=Bacillus megaterium G... [more]
TPIS_ACIF22.805e-2534.90Triosephosphate isomerase OS=Acidithiobacillus fer... [more]
TPIS_STAES2.951e-2534.67Triosephosphate isomerase OS=Staphylococcus epider... [more]
TPIS_STAEQ2.951e-2534.67Triosephosphate isomerase OS=Staphylococcus epider... [more]
TPIS_MYCHR3.664e-2535.08Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_DEHSC3.664e-2536.46Triosephosphate isomerase OS=Dehalococcoides sp. (... [more]
TPIS_DEHSB3.664e-2536.46Triosephosphate isomerase OS=Dehalococcoides sp. (... [more]
TPIS_BRASO3.664e-2536.17Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_BARHE3.664e-2536.32Triosephosphate isomerase OS=Bartonella henselae G... [more]
TPIS_NOCFA3.837e-2538.35Triosephosphate isomerase OS=Nocardia farcinica GN... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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