FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LEIXX (Triosephosphate isomerase OS=Leifsonia xyli subsp. xyli GN=tpiA PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.839e-25
Identity = 71/196 (36.22%), Postives = 97/196 (49.49%), Query Frame = 2
Query:   74 MARKFFVGGNWKCN----GTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            M R   + GNWK N     +   V+K+  TL +A                        +      +A   Q+      GA+TGE++A  L  L   +VI+GHSERR L NE+++ V  K A A+  G+  I CVGET E  E     AV   Q +A    I +  + V+AYEPVWAIG+G+ ATP QA++V A LR
Sbjct:    1 MRRVPLIAGNWKMNLDHLQSIAVVQKLAWTLKDAGHDFGAVEVAVFPPFTDLRSVQTLVAADKLPIAFGGQDVSEHDSGAYTGEIAASFLAALEARYVIIGHSERRTLHNETDEQVAAKTAQAVKNGISPIVCVGETAEDLEKHGASAVPVAQLRAALAGIDSAADFVVAYEPVWAIGSGQAATPEQAEQVAAALR 196          

HSP 2 Score: 24.6386 bits (52), Expect = 3.839e-25
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  670 EVAASTRIIYGG 705
            EVAA TRI+YGG
Sbjct:  206 EVAAKTRILYGG 217          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCS5 (Triosephosphate isomerase OS=Mycoplasma synoviae (strain 53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 71/200 (35.50%), Postives = 106/200 (53.00%), Query Frame = 2
Query:   83 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSVLK 673
            K  + GNWK N T    K+ +                             + L+ +     +AAQN    + GA+TGEVSA+ML++L++ +VILGHSE+R    E+++ V  K   AL + L  I CVGETLE+  +G T  VV  Q  A  + + +   V++AYEP+WAIGTGKVAT   AQ+V   +++     +V++
Sbjct:    3 KKLIVGNWKMNSTFSTTKEFLKEFQSLYSLNSKTYNQKATFAVATPFTNLAALKDNDLNLKLAAQNMSFYEKGAYTGEVSADMLLDLNVSYVILGHSEQRQYHAETDENVNKKARLALEKNLTPIVCVGETLEEYLAGKTKEVVKAQLAASLKDL-DVTKVIVAYEPIWAIGTGKVATAQIAQDVCKYIKELTSKQTVVQ 201          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBP (Triosephosphate isomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 78/206 (37.86%), Postives = 105/206 (50.97%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMS 664
            M+RK  + GNWK N    E    V+KI  +L +                           +      AQ+      GA+TG+VS   L  L   +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ RE+G+ VA   EQ +      +AE+I    +VV AYEPVWAIGTG+VA+ A AQEV A +RK L +++
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIG---SVVTAYEPVWAIGTGRVASAADAQEVCAAIRKELASLA 203          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ANOFW (Triosephosphate isomerase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 68/191 (35.60%), Postives = 96/191 (50.26%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK + T +E  + V  +                         ++   ++  + AQN      GAFTGE+S   L +L + +VI+GHSERR +  E+++ V  KV  A   GL  I C GETLE+RES  T  VV  Q +   E ++      VV+AYEP+WAIGTGK +T   A  V   +R+
Sbjct:    2 RKPIIAGNWKMHKTLKEALQFVEEVKHEVPSNEQVDAVVCAPALFLAHLVEATKGTNVKIGAQNMHFEDQGAFTGEISPVALKDLGVEYVIIGHSERREMFAETDETVNKKVLAAFKHGLVPIVCCGETLEERESNRTNEVVRVQVEKALEGLTEEQVKQVVIAYEPIWAIGTGKSSTAEDANNVCGYIRQ 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_THET2 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 71/193 (36.79%), Postives = 94/193 (48.70%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R+  V GNWK + T  E +   + L                         + L  +     AQ+    K GA+TGEVSA ML +L   + I+GHSERR    E++  V +K    L  G+  I CVGE LE RE G  V     Q +   E +     + +V+AYEPVWAIGTGK ATP  A+ +H E+RK L
Sbjct:    2 RRVLVAGNWKMHKTPSEARVWFAELKRL-LPPLQSEAAVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQEIRKAL 193          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SYNR3 (Triosephosphate isomerase OS=Synechococcus sp. (strain RCC307) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.250e-25
Identity = 66/193 (34.20%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVST-LNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            +R   + GNWK + T  + K+  +  L +                       ++L  SD  +A+QN   +  GAFTGE+SAEML+ L + + I+GHSE R   +ES++ +  +   + + GL  I CVGE+ EQR S  T  V+  Q +   E I     +V+AYEP+WAIGTGK     +A  V   +R W+
Sbjct:    5 SRPVVIAGNWKMHMTCAQAKQYAAAFLPQVANAPKDRSIVLAPPFTAISTLQEALAGSDVQIASQNVHWKDSGAFTGEISAEMLLELGVGYTIVGHSEPRKYFSESDEQINQRARASQAAGLIPILCVGESDEQRSSNETERVIRRQVEQGLEGIDP-SKLVVAYEPIWAIGTGKTCESEEANRVCGLIRNWV 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRSY (Triosephosphate isomerase OS=Streptococcus suis (strain 05ZYH33) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            M+RK  + GNWK N   +E +  V  +                              S+  VAAQNC+    GAFTGE S ++L  + + +V++GHSERR   +E+++ +  K       GL  I C GE+LE  E+G  V  V  Q  A  + ++     ++V+AYEP+WAIGTGK AT   AQ +   +R
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAPAVDLNALLWFAKDSELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTADQVASLVIAYEPIWAIGTGKSATKDDAQNMCKAVR 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRS2 (Triosephosphate isomerase OS=Streptococcus suis (strain 98HAH33) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            M+RK  + GNWK N   +E +  V  +                              S+  VAAQNC+    GAFTGE S ++L  + + +V++GHSERR   +E+++ +  K       GL  I C GE+LE  E+G  V  V  Q  A  + ++     ++V+AYEP+WAIGTGK AT   AQ +   +R
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAPAVDLNALLWFAKDSELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTADQVASLVIAYEPIWAIGTGKSATKDDAQNMCKAVR 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SILPO (Triosephosphate isomerase OS=Silicibacter pomeroyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 75/193 (38.86%), Postives = 95/193 (49.22%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKI--VSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R+    GNWK NGT   +  +  ++  + A                       S +R    +  Q+C     GA TG++SA ML +     VILGHSERRA   E++  V DK   AL  GL  I C+GETL QRE+G T+ VV  Q         +   VV+AYEPVWAIGTG V T  Q  EVH  LR+ L
Sbjct:    2 RRKLAAGNWKMNGTGAALDALEAIAGAHSAAAVDLLICPPATLLYRAAQVAEGSRVR----IGGQDCHAVTAGAHTGDISAMMLADAGASAVILGHSERRADHGETDAQVCDKARAALEAGLIAIICIGETLAQREAGQTLDVVCAQLAGSVPDGIDGTRVVVAYEPVWAIGTGLVPTLEQIAEVHDTLRQQL 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_RALEJ (Triosephosphate isomerase OS=Ralstonia eutropha (strain JMP134) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 65/129 (50.39%), Postives = 78/129 (60.47%), Query Frame = 2
Query:  263 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            AQ+      GAFTGEV+A ML      + ++GHSERR    ES+  V  K   AL  G+  + CVGETL QRE+G T  VV  Q +A  + +S      VVLAYEPVWAIGTGK A+  QAQ VHA LR
Sbjct:   60 AQDVSAEARGAFTGEVAASMLGEFGCTYALVGHSERRTYHGESDAVVAAKALRALEFGIIPVICVGETLAQREAGETEVVVGRQLQAALDALSVEQLGRVVLAYEPVWAIGTGKTASSEQAQAVHAFLR 188          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_LEIXX3.839e-2536.22Triosephosphate isomerase OS=Leifsonia xyli subsp.... [more]
TPIS_MYCS54.785e-2535.50Triosephosphate isomerase OS=Mycoplasma synoviae (... [more]
TPIS_MYCBP4.785e-2537.86Triosephosphate isomerase OS=Mycobacterium bovis (... [more]
TPIS_ANOFW4.785e-2535.60Triosephosphate isomerase OS=Anoxybacillus flavith... [more]
TPIS_THET26.250e-2536.79Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_SYNR36.250e-2534.20Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_STRSY8.163e-2533.85Triosephosphate isomerase OS=Streptococcus suis (s... [more]
TPIS_STRS28.163e-2533.85Triosephosphate isomerase OS=Streptococcus suis (s... [more]
TPIS_SILPO8.163e-2538.86Triosephosphate isomerase OS=Silicibacter pomeroyi... [more]
TPIS_RALEJ8.163e-2550.39Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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