FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_FRATM (Triosephosphate isomerase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 67/186 (36.02%), Postives = 98/186 (52.69%), Query Frame = 2
Query:  101 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            NWK NG S  +K++ S +++ +                      S L     V  QN      GA+TGE+SA ML ++   ++++GHSERR+L  ES++ V  K+   +   +  + C+GE+L+ R+SG    V+A Q   I E +S      VV+AYEPVWAIGTG VA+  Q QE H  +R  L
Sbjct:    8 NWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVI-SQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLL 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCCT (Triosephosphate isomerase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 66/191 (34.55%), Postives = 96/191 (50.26%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV--VLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK NGT+   K +   L + +                        L  +  +AAQN      GA+TGE+S  ML  + + +VI+GHSERR +  E++  +  K    L   +  I C GE+LE +E G T+  V  Q   I + IS  D +  ++AYEP+WAIGTGK A    A+EV  ++R+
Sbjct:    2 RKKVIFGNWKMNGTN---KSLEDFLYQVDNKVNNSKITAGLAVPYVMLQTGIKLAKNVKIAAQNVHFELKGAYTGEISVSMLKEIGVEYVIIGHSERREMFFETDLDINKKAKILLENNMIPIICCGESLETKEQGKTIEFVNNQINLIYQNISKQDAIKTIIAYEPIWAIGTGKTANSLDAEEVCKKIRE 189          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRR6 (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 66/190 (34.74%), Postives = 94/190 (49.47%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKM 187          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRPN (Triosephosphate isomerase OS=Streptococcus pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 66/190 (34.74%), Postives = 94/190 (49.47%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKM 187          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRPI (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 66/190 (34.74%), Postives = 94/190 (49.47%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKM 187          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRP4 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tpiA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 66/190 (34.74%), Postives = 94/190 (49.47%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKM 187          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRP2 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tpiA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 66/190 (34.74%), Postives = 94/190 (49.47%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVA---ASVIAYEPIWAIGTGKSASQDDAQKM 187          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SOLUE (Triosephosphate isomerase OS=Solibacter usitatus (strain Ellin6076) GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 74/190 (38.95%), Postives = 91/190 (47.89%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKI-SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            RK  + GNWK   T  E                                  ++  +   V AQN    K GAFTGEVS  ML  + +  VI+GHSERR   NE+++ V  +   AL  GL  I CVGE L  RE G T AV+A Q  K IA      +  +V+AYEPVWAIGTGK ATP  A + H  +R
Sbjct:    2 RKPVMAGNWKMYKTPAETIAFFEKFRPLVEKSSHCEIVICPPFTNLAAAVDAVRGTSIRVGAQNVGWAKEGAFTGEVSGPMLNAMGVSHVIIGHSERRQYFNETDETVLKRTQAALEFGLTPIVCVGELLADREGGRTEAVLAGQFQKGIAGLTEQQFAKIVIAYEPVWAIGTGKTATPEIAADTHRAIR 191          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PARUW (Triosephosphate isomerase OS=Protochlamydia amoebophila (strain UWE25) GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 61/146 (41.78%), Postives = 86/146 (58.90%), Query Frame = 2
Query:  257 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSVLKLQHQL 688
            + AQN      GAFTGE++ +M+      +V+LGHSERR L  E N F+  KV  AL  GL  + CVGET E+R+SG T  ++  Q +     ++  D   +++AYEPVWAIG G+ A P  AQE+H   RK +K +   +L  Q+
Sbjct:   64 IGAQNMNDASEGAFTGEIAGKMVKEAGASFVLLGHSERRHLYKEDNAFINRKVKKALEIGLTPVLCVGETFEERKSGETQQIIRTQIQECLAGLTAEDLKTLIIAYEPVWAIGNGQNAKPEGAQEIHQFCRKIIKEIFSEELAEQI 209          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LACSS (Triosephosphate isomerase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 63/191 (32.98%), Postives = 98/191 (51.31%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK N    +  + V+ +                         ++   +D  VAA+NC+  + GAFTGE S + L  + + +VI+GHSERR   +E+++ +  K        +  I C GE+LE RE+G     V+ Q     + +S     ++V+AYEP+WAIGTGK A+  QAQE+ A +R+
Sbjct:    2 RKPIIAGNWKMNMNPTQTTEFVNAIKANLPKFDQTESVIGAPAVDLPALLEAAKGTDLKVAAENCYFEEAGAFTGETSPKTLNEMGVDYVIIGHSERRDYFHETDEDINKKAHAIFKNNMTPIFCCGESLETREAGKAEEWVSNQVTEGLKGLSADQVSSMVIAYEPIWAIGTGKTASADQAQEICAVVRQ 192          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_FRATM8.163e-2536.02Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_MYCCT1.066e-2434.55Triosephosphate isomerase OS=Mycoplasma capricolum... [more]
TPIS_STRR61.392e-2434.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPN1.392e-2434.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPI1.392e-2434.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP41.392e-2434.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP21.392e-2434.74Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_SOLUE1.818e-2438.95Triosephosphate isomerase OS=Solibacter usitatus (... [more]
TPIS_PARUW1.818e-2441.78Triosephosphate isomerase OS=Protochlamydia amoebo... [more]
TPIS_LACSS1.818e-2432.98Triosephosphate isomerase OS=Lactobacillus sakei s... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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