FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DICTD (Triosephosphate isomerase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 67/191 (35.08%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            R+  +  NWK   T  E +  +    E                       K L  +   + AQN +  K GA+TGE+S  ML +L+  +VI+GHSERR   +E+ND +  K+  A    L  I CVGE  E+RE G T  V+ EQ K   + +     + +V+AYEPVWAIGTG  A    A EV   +R+
Sbjct:    2 RRKIIAANWKMYKTCAETESFIKEFKELSKGYEEKEIVICPPFTSLYVANKLLEDTPIKLGAQNMFWEKEGAYTGEISPIMLKDLNCSYVIIGHSERRQYFSETNDMINKKLKSAFEYELIPIFCVGEKWEEREKGKTEEVITEQVKKGLQGLEKEKVEKIVIAYEPVWAIGTGHSAKGEDANEVAKLIRR 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BARBK (Triosephosphate isomerase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 66/186 (35.48%), Postives = 93/186 (50.00%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD-FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            + GNWK NGTSE ++++ +  +  +                       +L  +   +  Q+C     G  TG++SA ML       VILGHSERR    ES+  V  KV  A   GL  + C+GETLE+RE+ + + V+A+Q K      +   N V+AYEP WAIGTGK  T     +VH  +RK
Sbjct:    9 LAGNWKMNGTSESLRELRAIASGIDSDRDRCFEALVCVPATLLSRASDILSDENIFLGGQDCHFNDSGPHTGDISACMLKEAGASHVILGHSERRTDYRESDAIVCAKVKAAWRAGLVALICIGETLEERENNTVLDVLAQQLKGSVPAGAMDHNTVIAYEPRWAIGTGKTPTSEDIAQVHGFIRK 194          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SULNB (Triosephosphate isomerase OS=Sulfurovum sp. (strain NBC37-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 54/133 (40.60%), Postives = 83/133 (62.41%), Query Frame = 2
Query:  248 DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            DF + AQN ++ K GAFTGE+  + L   +I  +++GHSERR +L E   FV +K +Y  S+G ++I C+GE LE RE+G    +V   ++     +S ++ +++AYEP+WAIGTG  AT       HA L++
Sbjct:   51 DFTIGAQNAYLEKNGAFTGEIGLDQLDEFAIKTILIGHSERRDILGEDQAFVAEKFSYFKSQGFEIIYCIGEALEVREAGEEAVMVHLLSQFEGIDLS-YEKMIVAYEPIWAIGTGHSATTEAIASTHAALKQ 182          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LACLM (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 69/201 (34.33%), Postives = 100/201 (49.75%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            M+RK  + GNWK N T  E +  V  +                              S+  +AA+N +    GAFTGE S   +V+L I ++I+GHSERR   +E+++ +  K     + G   I C GETLE  E+G T   V+ Q +A      AE++S   N+V+AYEP+WAIGTGK AT   A E    +R  ++ +
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGIEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQVS---NLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKL 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_FRAP2 (Triosephosphate isomerase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 64/184 (34.78%), Postives = 96/184 (52.17%), Query Frame = 2
Query:   98 GNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            GNWK NG+S  +K++   ++E                         L + +  V  QN      GA+TGE+SAEML ++   ++++GHSERR+L  E++  V  K+   +   +  + C+GE+LE R+ G    V+  Q   I E +S      V++AYEPVWAIGTG VA+  Q QE H  +R
Sbjct:    7 GNWKMNGSSASIKELCKGISEVNYNSEKVAVAVFPSSVYVKEVLAQLPK-EIGVGLQNITFYDNGAYTGELSAEMLHDVGCNYLLIGHSERRSLFGETDQDVFKKLNKIIDTSVVPVVCIGESLEDRQGGRLEKVLTTQLSLILENLSIEQLARVIIAYEPVWAIGTGVVASLEQVQETHQFIR 189          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_THET8 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tpiA PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 70/193 (36.27%), Postives = 93/193 (48.19%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R+  V GNWK + T  E +   + L                         + L  +     AQ+    K GA+TGEVSA ML +L   + I+GHSERR    E++  V +K    L  G+  I CVGE LE RE G  V     Q +   E +     + +V+AYEPVWAIGTGK ATP  A+ +H  +RK L
Sbjct:    2 RRVLVAGNWKMHKTPSEARVWFAELKRL-LPPLQSEAAVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKAL 193          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LACLS (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 68/201 (33.83%), Postives = 100/201 (49.75%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            M+RK  + GNWK N T  E +  V  +                              S+  +AA+N +    GAFTGE S   +V+L + ++I+GHSERR   +E+++ +  K     + G   I C GETLE  E+G T   V+ Q +A      AE++S   N+V+AYEP+WAIGTGK AT   A E    +R  ++ +
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQVS---NLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKL 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BLOFL (Triosephosphate isomerase OS=Blochmannia floridanus GN=tpiA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 62/190 (32.63%), Postives = 96/190 (50.53%), Query Frame = 2
Query:  101 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRS----DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            NWK NG    +   +  L                         K+ L S       + +QN  +   GAFTG++SA ML +LS+ +V++GHSERR    E+N  +  K +      L  I C+GE  E+R+SGST ++  +Q  +I +   I  ++N ++AYEPVWAIG+G  A+P   Q +H  +R ++
Sbjct:    9 NWKLNGNKNTITNSLINLTTQLTNIPQYIKIAIAPPILYIDMVKNHLTSYNNKTIELCSQNVDIHLSGAFTGDISASMLKDLSVKYVLIGHSERRIYHKENNSLIAQKFSIIKQTELIPILCIGENKEERDSGSTQSICIQQIDSIIKLVGIKAFENTIIAYEPVWAIGSGSSASPRNVQSIHQFIRNYI 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PROM5 (Triosephosphate isomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 65/192 (33.85%), Postives = 98/192 (51.04%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDF-HVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK + T  E K  +                             S    D+  +A+QN      GAFT E+S +ML+  ++ + I+GHSE R   +ES++ +  +  +A S GL  I CVGETLEQRE G    V+   T+ + + + N D  N+++AYEP+WAIGTGK    + A ++ A +R+
Sbjct:    2 RKSVIAGNWKMHMTCAETKNYLEEFIPLIKDLPNDRKIVIAPPFTAISTFSSYSNFDYLDIASQNIHWEDQGAFTAEISPKMLIEHNVKYAIVGHSEPRKYFSESDEQINKRAVFAQSSGLTPIVCVGETLEQRERGEANRVI---TRQVEQGLENTDPSNLIIAYEPIWAIGTGKTCEASDANKICALIRE 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LACLA (Triosephosphate isomerase OS=Lactococcus lactis subsp. lactis GN=tpiA PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 68/201 (33.83%), Postives = 100/201 (49.75%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            M+RK  + GNWK N T  E +  V  +                              S+  +AA+N +    GAFTGE S   +V+L + ++I+GHSERR   +E+++ +  K     + G   I C GETLE  E+G T   V+ Q +A      AE++S   N+V+AYEP+WAIGTGK AT   A E    +R  ++ +
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLSAEQVS---NLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKL 198          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DICTD1.818e-2435.08Triosephosphate isomerase OS=Dictyoglomus turgidum... [more]
TPIS_BARBK1.818e-2435.48Triosephosphate isomerase OS=Bartonella bacillifor... [more]
TPIS_SULNB2.375e-2440.60Triosephosphate isomerase OS=Sulfurovum sp. (strai... [more]
TPIS_LACLM2.375e-2434.33Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_FRAP22.375e-2434.78Triosephosphate isomerase OS=Francisella philomira... [more]
TPIS_THET83.102e-2436.27Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_LACLS3.102e-2433.83Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_BLOFL3.102e-2432.63Triosephosphate isomerase OS=Blochmannia floridanu... [more]
TPIS_PROM54.051e-2433.85Triosephosphate isomerase OS=Prochlorococcus marin... [more]
TPIS_LACLA4.051e-2433.83Triosephosphate isomerase OS=Lactococcus lactis su... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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