FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BRAJA (Triosephosphate isomerase OS=Bradyrhizobium japonicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 63/187 (33.69%), Postives = 89/187 (47.59%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            + GNWK NG      +  + LN A                               V AQ+C  +  GA TG+++AEML N     +I+GHSERRA   E +  V  K   A   G+  I C+GET  QR++G T+ ++  Q        S   N+V+AYEPVWAIGTG   T    +++H  +R++L
Sbjct:    9 IAGNWKMNGLKASAAEFDAMLNGAADVATKADLLVCPPATLIAAFADKARGKKVAVGAQDCHPKASGAHTGDIAAEMLANAGATAIIVGHSERRADHGEGDALVRQKAEAAWRAGVTAIVCIGETQAQRDAGQTLDILRGQLDGSLPDGSTAANLVVAYEPVWAIGTGLTPTVQDVEQIHGFIREFL 195          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BACSK (Triosephosphate isomerase OS=Bacillus clausii (strain KSM-K16) GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 67/191 (35.08%), Postives = 95/191 (49.74%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK N T  E    V  +                         +++  ++  + AQ       GAFTGE+S + L ++ + +VI+GHSERR +  E+++ V  KV  A +  L  I C GET E+RE+G   AVV EQ +     +S       V+AYEP+WAIGTGK AT   A E  A +R+
Sbjct:    2 RKPIIAGNWKMNKTIGEAVDFVEAVKANVPAQATVDSVVCAPALFLDRLLQAVKGTELKIGAQTMHFEDNGAFTGEISPKALSDMGVHYVIIGHSERREMFAETDETVNKKVHAAFAHHLVPIMCCGETAEEREAGKMEAVVKEQVENGLAGLSEEQVKQTVIAYEPIWAIGTGKSATEKDANEACAYVRQ 192          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PROMP (Triosephosphate isomerase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=tpiA PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 65/200 (32.50%), Postives = 100/200 (50.00%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDF-HVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSVL 670
            RK  + GNWK + T  + KK +                             +    D+ ++A+QN      GAFT E+S  ML+   + + I+GHSE R   +ES++ +  +  +A S GL  I CVGETLEQRE G    V+   T+ + + + N D  N+++AYEP+WAIGTGK    + A ++ A +R  +    V+
Sbjct:    2 RKSVIAGNWKMHMTCADTKKYLEEFLPLIEEIPNDRKIVIAPPFTAISTFSNYTNFDYLNIASQNIHWEDKGAFTAEISPNMLIEHKVKYAIVGHSEPRKYFSESDEQINKRAVFAQSSGLTPIVCVGETLEQRERGEADRVI---TRQVEQGLENTDPSNLIVAYEPIWAIGTGKTCEASDANKICALIRSLIGFSDVI 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ENTFA (Triosephosphate isomerase OS=Enterococcus faecalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 65/196 (33.16%), Postives = 96/196 (48.98%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            RK  + GNWK N T  E +     +  A                       +L  S+  +AAQNC+    GAFTGE S   + +L + +VI+GHSERR   +E+++ +  K     + G+  I C GETLE  E+G T   +  Q       +SN    ++V+AYEP+WAIGTGK A    A E+   +R  ++ +
Sbjct:    2 RKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVKLAAQNCYWENAGAFTGENSPAAIADLGVDYVIIGHSERREYFHETDEDINKKAKAIFANGMTPIFCCGETLETYEAGKTAEWIEGQITKGLVGLSNEQVASMVIAYEPIWAIGTGKSADANIADEICGVVRSTVEKL 197          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRTD (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=tpiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            M+RK F+ GNWK N   EE K  V  +                          +   S+  VAAQN +    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A    ++     + V+AYEP+WAIGTGK A+   AQ++
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSADLVEAGIAVPAVDLTTVIAAAKGSNLKVAAQNTYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMIPIICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKM 187          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRT2 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=tpiA PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            M+RK F+ GNWK N   EE K  V  +                          +   S+  VAAQN +    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A    ++     + V+AYEP+WAIGTGK A+   AQ++
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSADLVEAGIAVPAVDLTTVIAAAKGSNLKVAAQNTYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMIPIICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKM 187          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRT1 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tpiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            M+RK F+ GNWK N   EE K  V  +                          +   S+  VAAQN +    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A    ++     + V+AYEP+WAIGTGK A+   AQ++
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSADLVEAGIAVPAVDLTTVIAAAKGSNLKVAAQNTYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMIPIICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKM 187          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PROMS (Triosephosphate isomerase OS=Prochlorococcus marinus (strain AS9601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 68/201 (33.83%), Postives = 101/201 (50.25%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKK-------IVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFH---VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            RK  + GNWK + T  E K        ++  +NE                            SDF    +++QN      GAFT E+S +ML+   + + I+GHSE R   +ES++ +  +  +A S GL  I CVGETLEQRE G  V V+   T+ + + + N D  N+++AYEP+WAIGTGK      A ++ + +RK
Sbjct:    2 RKSVIAGNWKMHMTCAEAKSYLKEFIPLIKDINEDRKVVIAPPFTAISTFSN---------HSDFDYLDISSQNIHWEDQGAFTAEISPKMLLEHGVSYAIVGHSEPRKYFSESDEQINKRAVFAQSSGLTPIVCVGETLEQRERGEAVRVI---TRQVEQGLENTDPSNLIVAYEPIWAIGTGKTCQAEDANKICSLIRK 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_JANSC (Triosephosphate isomerase OS=Jannaschia sp. (strain CCS1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 73/193 (37.82%), Postives = 95/193 (49.22%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MARK    GNWK NG   ++ + V  L EA                      ++ L  D +V  Q C     GA TG+VSA ML +     VILGHSERRA   E ++ V  +V  A+   L  I CVGET  +R++  T+ VV+ Q        +    +V+AYEPVWAIGTG+  T  Q  EVH  +R  L
Sbjct:    1 MARKL-AAGNWKMNGVEADLAE-VDALGEAVAAANCDVLLCPPATLIAPMAKRAGLM-DLYVGGQTCHTAASGAHTGDVSAAMLADAGASHVILGHSERRADHGERSEDVAAQVTAAIDANLIAIICVGETEAERDANVTLNVVSSQLAGSIPTGATPAQIVVAYEPVWAIGTGRTPTLEQIAEVHDHIRSEL 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ANASP (Triosephosphate isomerase OS=Anabaena sp. (strain PCC 7120) GN=tpiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEA-EXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSV 667
            RK  + GNWK   T  E ++ +     A E                     +SL  S   + AQN    + GA+TGE+S  ML  + + +VI+GHSERR    E+++ V  ++  A   GL  I CVGET +QR+SG T +++  Q   + + + N D  N+V+AYEP+WAIGTG      +A  V   +R  LK   V
Sbjct:    2 RKIVIAGNWKMFKTQAESQEFLKEFLPALEETPQEREVLLCVPFTDLAILSQSLHGSLVQLGAQNVHWAENGAYTGEISGPMLTEIGVRYVIVGHSERRQFFGETDETVNLRLQAAQKYGLTPILCVGETKQQRDSGETESLIVSQ---LDKDLINVDQTNLVIAYEPIWAIGTGDTCETTEANRVIGLIRSQLKNSDV 197          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BRAJA4.051e-2433.69Triosephosphate isomerase OS=Bradyrhizobium japoni... [more]
TPIS_BACSK4.051e-2435.08Triosephosphate isomerase OS=Bacillus clausii (str... [more]
TPIS_PROMP5.291e-2432.50Triosephosphate isomerase OS=Prochlorococcus marin... [more]
TPIS_ENTFA5.291e-2433.16Triosephosphate isomerase OS=Enterococcus faecalis... [more]
TPIS_STRTD1.179e-2333.69Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_STRT21.179e-2333.69Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_STRT11.179e-2333.69Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_PROMS1.179e-2333.83Triosephosphate isomerase OS=Prochlorococcus marin... [more]
TPIS_JANSC1.179e-2337.82Triosephosphate isomerase OS=Jannaschia sp. (strai... [more]
TPIS_ANASP1.179e-2334.67Triosephosphate isomerase OS=Anabaena sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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