FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 67/196 (34.18%), Postives = 98/196 (50.00%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-----SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R   + GNWK + T  E ++ +  L  A                       +++      SD  V AQN      GAFTGE+S  ML  L + +VI+GHSERR    E+++ V  ++A A   GL  I CVGE+ +QRE G T + +  Q     + I + +N+V+AYEP+WAIGTG+     +A  V   +R+ L
Sbjct:    2 RPILIAGNWKMHKTQAEAREFLRELGLALRSSPSGSASQRQIILCVPFTDLAVVAEQSRGSDIAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHL 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_RHOP5 (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisA53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 68/194 (35.05%), Postives = 93/194 (47.94%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRS--DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            A +  + GNWK NG   ++ +  + L  A                      + L      F V AQ+C     GA TG++SAEMLV+     +I+GHSERRA   E++  V  K   A   G   I CVGET  +R++G T+ VV  Q        +  +N V+AYEPVWAIGTG   T    ++VH  +R  L
Sbjct:    4 AIRALIAGNWKMNGLKAQLAEFEAMLAGAPALADKADLLVCPPATLLHAFGQKLGNGARSFAVGAQDCHANVSGAHTGDLSAEMLVDAGASAIIVGHSERRADHGETDSVVRAKAEAAWRAGAVAIVCVGETQAERDAGQTLDVVGRQLAGSLPDGATAENTVVAYEPVWAIGTGLTPTANDVEQVHKFIRDCL 197          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_OLICO (Triosephosphate isomerase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 62/185 (33.51%), Postives = 89/185 (48.11%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRK 646
            + GNWK NG    + ++ +    A                       +++ S   +  Q+C     GA TG++SAEML +    +VI+GHSERR    E++  V  K   A   GL  I CVGET  +R++G    VV  Q        +   N+V+AYEPVWAIGTG   T    +E+HA +R+
Sbjct:    9 IAGNWKMNGLKASLGELAAIGKGAGEVWRRVDLLICPPATLIFPAAAAMIGSKVAIGGQDCHAEASGANTGDISAEMLADAGATYVIVGHSERRTDHGETDAVVRAKAEAAWRAGLVAIVCVGETRAERDAGRAAEVVGRQLDGSVPDGARAANLVVAYEPVWAIGTGLTPTSQDIEEIHAVIRQ 193          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LACGA (Triosephosphate isomerase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 64/195 (32.82%), Postives = 99/195 (50.77%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            + GNWK +   E+  + V+ +                         K+   SD H  A+N +    GAFTGE S ++L  + I + I+GHSERR   +E+++ +  K     + G+  I C GE+LE RE+      V  Q KA      AE++S    +V+AYEP+WAIGTGK A+  QA+E+   +R+ +K +
Sbjct:    6 IAGNWKLHMNPEQTVEFVNAVKGKLPDPSKVESVIAAPAVDLYVLKKAAEGSDLHTGAENAYFEVEGAFTGETSPKVLNEMGIDYCIIGHSERRGYFHETDEDINKKAKALFANGVTPIICCGESLETREANKQEDWVVAQIKAALDGLTAEQVS---KLVIAYEPIWAIGTGKTASADQAEEMCKTIRETVKDL 197          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CHRVO (Triosephosphate isomerase OS=Chromobacterium violaceum GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 60/120 (50.00%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  290 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            GAFTGEVSA ML ++   + ++GHSERR    E N  +  K+  A++ G+  + CVGETL QRE+G  + VV EQ  AI   I++ + VV AYEPVWAIGTGKVA+  Q  E+HA ++ W
Sbjct:   72 GAFTGEVSAAMLADVGCRYALVGHSERRQYFREDNAALLAKMRNAIAAGVTPVLCVGETLAQREAGDYLNVVREQL-AILSDIADGEYVV-AYEPVWAIGTGKVASLEQIAEIHAFIKNW 189          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BIFLO (Triosephosphate isomerase OS=Bifidobacterium longum GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 71/197 (36.04%), Postives = 100/197 (50.76%), Query Frame = 2
Query:   92 VGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            V GNWK N    E    V+K+V  L +A                        +     HVA  AQ+  V   GAFTG+VSA+M+ +L   +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +     Q + +   ++      +++AYEPVWAIGTG VATP  AQ+    +R  LKT
Sbjct:    9 VAGNWKMNFDHLEATYFVQKLVWLLRDAHFDFKRCEVALFPSFTSLRSVQVLVEADKLHVAYGAQSVSVTTQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESFEERRQGIELDFAVGQVRDVTRDLNEEQAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRNDLKT 205          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BIFLD (Triosephosphate isomerase OS=Bifidobacterium longum (strain DJO10A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 71/197 (36.04%), Postives = 100/197 (50.76%), Query Frame = 2
Query:   92 VGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVA--AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            V GNWK N    E    V+K+V  L +A                        +     HVA  AQ+  V   GAFTG+VSA+M+ +L   +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +     Q + +   ++      +++AYEPVWAIGTG VATP  AQ+    +R  LKT
Sbjct:    9 VAGNWKMNFDHLEATYFVQKLVWLLRDAHFDFKRCEVALFPSFTSLRSVQVLVEADKLHVAYGAQSVSVTTQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESFEERRQGIELDFAVGQVRDVTRDLNEEQAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRNDLKT 205          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ANAVT (Triosephosphate isomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEA-EXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSV 667
            RK  + GNWK   T  E ++ +     A E                     +SL  S   + AQN    + GA+TGE+S  ML  + + +VI+GHSERR    E+++ V  ++  A   GL  I CVGET +QR+SG T +++  Q   + + + N D  N+V+AYEP+WAIGTG      +A  V   +R  LK   V
Sbjct:    2 RKIVIAGNWKMFKTQAESQEFLKEFLPALEETPQEREVLLCVPFTDLAILSQSLHGSLVQLGAQNVHWAENGAYTGEISGPMLTEIGVRYVIVGHSERRQFFGETDETVNLRLQAAQKYGLTPILCVGETKQQRDSGETESLIVSQ---LDKDLINVDQTNLVIAYEPIWAIGTGDTCETTEANRVIGLIRSQLKNPDV 197          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BART1 (Triosephosphate isomerase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 62/186 (33.33%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   89 FVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD-FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            F+ GNWK NGT E + ++ +                              L  +   +  QNC     G +TG++SA ML       VI+GHSERR +  E++  V  KV  A   GL  + C+GETLE+R++   + V+A+Q +      +  +N ++AYEPVWAIGTG  AT     +VH  +R
Sbjct:    8 FLAGNWKMNGTRESLGELRAIATGVSSNSGHLFEALICVPATLLSRAYDTLNGESLLLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQENDAIVCAKVQAAWHAGLVALVCIGETLEERDNNKVMDVLAQQLEGSLPDDTTAENTIIAYEPVWAIGTGNTATSEDIAKVHYFIR 193          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BARQU (Triosephosphate isomerase OS=Bartonella quintana GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 66/186 (35.48%), Postives = 90/186 (48.39%), Query Frame = 2
Query:   89 FVGGNWKCNGTSEEVKKIVS-TLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            F+ GNWK NGT E + ++ +     +                       +L   +  +  QNC     G +TG++SA ML       VI+GHSERR +  ES+  V  KV  A   GL  + CVGETLE+R S     V+  Q +      +  +NV++AYEPVWAIGTG   T A   EVH  +R
Sbjct:    8 FIAGNWKMNGTVESLGELRAIAAGVSSDLGHLFEALICVPATLLSRASDALSGENLLLGGQNCHFDDCGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVCAKVQAAWRAGLVALICVGETLEERTSNKVFNVLTRQLEGSLPDGATAENVIIAYEPVWAIGTGNSPTSAVVAEVHDFIR 193          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SYNJB1.539e-2334.18Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_RHOP51.539e-2335.05Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_OLICO1.539e-2333.51Triosephosphate isomerase OS=Oligotropha carboxido... [more]
TPIS_LACGA1.539e-2332.82Triosephosphate isomerase OS=Lactobacillus gasseri... [more]
TPIS_CHRVO1.539e-2350.00Triosephosphate isomerase OS=Chromobacterium viola... [more]
TPIS_BIFLO1.539e-2336.04Triosephosphate isomerase OS=Bifidobacterium longu... [more]
TPIS_BIFLD1.539e-2336.04Triosephosphate isomerase OS=Bifidobacterium longu... [more]
TPIS_ANAVT1.539e-2334.67Triosephosphate isomerase OS=Anabaena variabilis (... [more]
TPIS_BART12.011e-2333.33Triosephosphate isomerase OS=Bartonella tribocorum... [more]
TPIS_BARQU2.011e-2335.48Triosephosphate isomerase OS=Bartonella quintana G... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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