FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig900 contig Ccv1_Contig900:2..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SACEN (Triosephosphate isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.598e-23
Identity = 79/199 (39.70%), Postives = 99/199 (49.75%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEE----VKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            MAR+  + GNWK N    E    V+KI  +L E                       ++L+  D       AQ+    + GA+TGEVS  ML  L   +V++GHSERR    E+++ V  KV   L  G+  I CVGE LE RE+G  V     Q     +  K      VV+AYEPVWAIGTGKVAT A AQEV A LR
Sbjct:    1 MARQPLIAGNWKMNLNHLEAIALVQKIAFSLPEK---YFAKVEVAVIPPFTDIRSVQTLIDGDKLLLKHGAQDVSEHESGAYTGEVSGPMLAKLGCSYVVVGHSERREHHAETDEVVNRKVRAVLKHGMSPILCVGEPLEVREAGGHVEHSTTQLINALKGLKTEQIRQVVVAYEPVWAIGTGKVATAADAQEVCAALR 196          

HSP 2 Score: 21.1718 bits (43), Expect = 2.598e-23
Identity = 7/17 (41.18%), Postives = 10/17 (58.82%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            D    E+A   R++YGG
Sbjct:  201 DKYGKEIADEVRVLYGG 217          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJA (Triosephosphate isomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 68/196 (34.69%), Postives = 96/196 (48.98%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-----RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R   + GNWK + T  E ++ +     A                       +++      S   V AQN      GAFTGE+S  ML  L + +VI+GHSERR    E+++ V  ++A A   GL  I CVGE+L+QRE G T + +  Q       I +  N+V+AYEP+WAIGTGK    A+A  V   +R+ L
Sbjct:    2 RPILIAGNWKMHKTQAEARQFLREFRPALQASSAGVRPQRQIILCVPFTDLAVVVEETRGSGMAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESLQQREQGLTESWIVGQLDRALPGI-DLRNLVIAYEPIWAIGTGKTCAAAEANRVIGLIRQHL 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PSYWF (Triosephosphate isomerase OS=Psychrobacter sp. (strain PRwf-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 73/208 (35.10%), Postives = 110/208 (52.88%), Query Frame = 2
Query:   83 KFFVGGNWKCNGTS-EEVKKIVSTLNE---AEXXXXXXXXXXXXXXXXXXXXXKSLLR---SDFHVAAQNCWV--RKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW---------DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            K +V GNWK N TS E+V+ +V+ L E   A+                     +  L    S   +AAQ+      + GA+TG+VSA+ L ++ + WVI+GHSERR    ESN  +  K+  +  +GL VI C+GE+    E+G T  V+ E+ + IA+ +             N+++AYEPVWAIGTGKV +  Q  ++H  +R+ L
Sbjct:    2 KSWVIGNWKLNPTSLEQVQHLVTDLVEGVDAQTRSMDNCHLMLAPSFLHLSPVQQALNANSSTLKLAAQDVSALSAESGAYTGDVSAKQLKDMGVQWVIVGHSERRQYYKESNAVLLKKLLNSAEQGLGVILCIGESESDFEAGHTEQVLDEELQVIADFLQQLKPEQAGYAEQNLIIAYEPVWAIGTGKVPSVEQVTQIHRFIRQQL 209          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 66/186 (35.48%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   83 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSL----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            K  + GNWK N T  E +  +   +                         SL    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKV 186          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 66/186 (35.48%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   83 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSL----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            K  + GNWK N T  E +  +   +                         SL    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKV 186          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH7 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 66/186 (35.48%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   83 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSL----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            K  + GNWK N T  E +  +   +                         SL    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKV 186          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 66/186 (35.48%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   83 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSL----LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEV 628
            K  + GNWK N T  E +  +   +                         SL    L     +AAQN      GAFTGE+S +ML +L   +VI+GHSERR +  E ++ + +K+  A    L  + CVGE+L + E+G T  V+  Q  AI + + N+   ++AYEP+WAIGTGK AT A A++V
Sbjct:    2 KKIIIGNWKMNKTVSETRDFIQKFDIFYQENVGKIKEDLDFAIAPSFISLSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAI-KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKV 186          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 66/188 (35.11%), Postives = 91/188 (48.40%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            + GNWK NG      +  + L   AE                     K+       V AQ+C  +  GA TG++SAEML +     +I+GHSERRA   ES+  V  K       GL  I CVGET +QR++G T+ ++  Q      + S   N+ +AYEPVWAIGTG   T    +++HA +R  L
Sbjct:    9 IAGNWKMNGLKASTAEFEAMLAGAAEVTGKADLLVCPPATLLAGFADKARGTRAVAVGAQDCHAKASGAHTGDLSAEMLADAGASAIIVGHSERRADHGESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLL 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIME (Triosephosphate isomerase 1 OS=Rhizobium meliloti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 67/188 (35.64%), Postives = 93/188 (49.47%), Query Frame = 2
Query:   92 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            V GNWK NGT   + +I +     +                      +L   S   + AQ+C  ++ GA TGEVSAEM+ +     VI+GHSERR    E +  V  K   A    L  I CVGET E+R++G T+ ++  Q        +  +N V+AYEPVWAIGTG   T +  +E HA +R+ L
Sbjct:    9 VAGNWKMNGTRASLDQIKAMAEGVKGDLSARVDALICPPATLLYVATALCDDSPLMIGAQDCHQKQSGAHTGEVSAEMVADCFGTHVIVGHSERRTDHGEGDALVRAKTEAAHGADLVAIVCVGETEEERKAGRTLDILKRQLSESLPDQATAENTVIAYEPVWAIGTGLTPTVSDVEEAHAFMRREL 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_STRMU (Triosephosphate isomerase OS=Streptococcus mutans GN=tpiA PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            M+RK  + GNWK N T+ E ++ +  +                         K +  ++  VAAQNC+    GAFTGE S   L  L + +VI+GHSERR   +E++  +  K        +  I C GE+LE  E+G T   +  Q  A  + +S     ++V+AYEP+WAIGTGK A    A ++   +R
Sbjct:    1 MSRKPIIAGNWKMNKTAAEAREFIDAVKNNIPSNNLVDTVIGSPALFLEGMKKGVKGTELQVAAQNCYWEDFGAFTGETSPAALAALGVDYVIIGHSERRDYFHETDQEINKKAHAIFKHKMTPILCCGESLETYEAGKTAEWIEGQITADLKGLSAEQVSSMVIAYEPIWAIGTGKSADANIADDICGVVR 192          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SACEN2.598e-2339.70Triosephosphate isomerase OS=Saccharopolyspora ery... [more]
TPIS_SYNJA2.626e-2334.69Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_PSYWF2.626e-2335.10Triosephosphate isomerase OS=Psychrobacter sp. (st... [more]
TPIS_MYCHY2.626e-2335.48Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ2.626e-2335.48Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH72.626e-2335.48Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH22.626e-2335.48Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_BRASB2.626e-2335.11Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS1_RHIME2.626e-2335.64Triosephosphate isomerase 1 OS=Rhizobium meliloti ... [more]
TPIS_STRMU3.429e-2332.81Triosephosphate isomerase OS=Streptococcus mutans ... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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