FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 6.966e-45
Identity = 87/193 (45.08%), Postives = 123/193 (63.73%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MAR FFVGGN+K NGT   +K+IV  LN A+                       + +S   V AQN +++  GAFTGE S + + ++   WVILGHSERR    E +  + +K A+ALS+G+ VI C+GETL+Q+++G+T+ VV  Q +A+ +K+ +W NVV+AYEPVWAIGTG  ATP  AQE+H  +R++L
Sbjct:    1 MARTFFVGGNFKLNGTKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTV-SLVKKSQVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREFL 192          

HSP 2 Score: 23.483 bits (49), Expect = 6.966e-45
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  670 EVAASTRIIYGGFCNG 717
            + A  TRI+YGG  NG
Sbjct:  199 KTAQETRILYGGSANG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.211e-44
Identity = 92/197 (46.70%), Postives = 118/197 (59.90%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            M RK FVGGNWK NG+   +     TL +A+                     K+       +AA+NC+    GAFTGE+S EM+ +    WVILGHSERR +  ESN+ +G+KV +AL  GL VI C+GE L +RE+G T  V   Q  AIA+ + +   WD VV+AYEPVWAIGTGK ATPAQAQEVH  +R W++
Sbjct:    1 MTRKLFVGGNWKMNGSYSHINTFFDTLQKADTDPNADIVIGVPACYLKYAQDKA--PKGIKIAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIR 195          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.211e-44
Identity = 94/205 (45.85%), Postives = 126/205 (61.46%), Query Frame = 2
Query:  101 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERR--ALLNESNDFVGDKVAYALSRG-LKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSVLKLQHQLESSTEV 706
            NWKCN +  ++ ++VS  N A                      +  LR+DF  +AQN W+ KGGAFTGE+ A M+ ++   WVILGHSERR  A L ES+  +  K AYAL    L VI C+GE LE+RESG T+AV   Q +A+++ IS+W +VV+AYEPVWAIGTGKVATP QA++VH  +R WL       +  Q+ +ST +
Sbjct:    1 NWKCNLSKADIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLAN----NVSPQVAASTRI 201          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.009e-44
Identity = 93/194 (47.94%), Postives = 121/194 (62.37%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            M RKFFVGGNWK NG    V  IV+ LN +                      KS L++   VAAQNC+    GAFTGE+S  M+ +L + WVILGHSERR +  ES+  + +K  +AL  G+KV+ C+GE LE+RE+G T  V   Q +AI +K  +W+N+V+AYEPVWAIGTGK A+  QAQEVH  +R +LK
Sbjct:    1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYA--KSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLK 192          

HSP 2 Score: 24.6386 bits (52), Expect = 2.009e-44
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGG 705
            + VS  VA +TRIIYGG
Sbjct:  193 EKVSPAVADATRIIYGG 209          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.794e-44
Identity = 91/186 (48.92%), Postives = 115/186 (61.83%), Query Frame = 2
Query:  101 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            NWKCNGT+  ++K+V   NE                       K  LR+  +V +    + K GAFTGEVS  +L ++ + WVILGHSERR    E+++ V  KV+ A  +G  VIAC+GETL+QRE+  T  VV  QT AIA K++   W+ VVLAYEPVWAIGTGKVATP QAQEVH  LRKW+
Sbjct:   12 NWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAK--LRNPKYVISAENAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWV 195          

HSP 2 Score: 26.5646 bits (57), Expect = 5.794e-44
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCN 714
            +N+  +VAA  RI+YGG  N
Sbjct:  197 ENIGTDVAAKLRILYGGSVN 216          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.545e-44
Identity = 94/200 (47.00%), Postives = 121/200 (60.50%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEA-EXXXXXXXXXXXXXXXXXXXXXKSLLRSDFH-----VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            A KF VGGNWKCNGT   ++ +   +  + +                     + +L  + +     V+A+N W  K GA+TGEV   MLV+  +P+VILGHSERR + +ESN+ V +KV  A+  GLKVIAC+GET  QR +  T  VVA Q KAI   IS   W N++LAYEPVWAIGTGK ATP QAQEVH  +RKW+
Sbjct:    3 AGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANGANILVSAENAWT-KSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWM 201          

HSP 2 Score: 27.7202 bits (60), Expect = 7.545e-44
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCN 714
            +N+S EVA +TRI YGG  N
Sbjct:  203 ENISKEVAEATRIQYGGSVN 222          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 9.841e-44
Identity = 88/194 (45.36%), Postives = 124/194 (63.92%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRS-DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MAR FFVGGN+K NG+ + +K+IV  LN A                       SL++     V AQN +++  GAFTGE S + + ++   WVILGHSERR+  +E + F+ DK  +AL +G+ VI C+GETLE++++G T+ VV  Q  A+ E++ +W NVV+AYEPVWAIGTG  ATP  AQ++HA +RK+L
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSV--SLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFL 192          

HSP 2 Score: 21.9422 bits (45), Expect = 9.841e-44
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  670 EVAASTRIIYGGFCNG 717
            + A+  RI+YGG  NG
Sbjct:  199 KAASELRILYGGSANG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 9.841e-44
Identity = 86/193 (44.56%), Postives = 121/193 (62.69%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MAR FF+GGN+K NGT   +K+IV  LN A                       +  ++   VAAQN +++  GAFTGE S E + ++   WVILGHSERR   +E+++F+ DK  +AL  G+KVI C+GETLE+++ G T+ VV  Q +A+ +K+ +W NVV+AYEPVWAIGTG  AT   AQ +H  +R++L
Sbjct:    1 MARTFFIGGNFKMNGTKASIKEIVERLNSASIPSNVEVVIAPPAAYLDHAVSLNK-KAQVSVAAQNAYLKASGAFTGENSVEQIKDVGAEWVILGHSERRTYFHETDEFIADKTKFALDSGVKVILCIGETLEEKQKGITLEVVQRQLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFL 192          

HSP 2 Score: 23.0978 bits (48), Expect = 9.841e-44
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  661 VSAEVAASTRIIYGGFCNG 717
            +S + A   RI+YGG  NG
Sbjct:  196 LSKDTAEKIRILYGGSANG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.698e-43
Identity = 89/194 (45.88%), Postives = 120/194 (61.86%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK 655
            M+R FFVGGN+K NG+ E +K IV  LN +E                     +SL +    VA QN + +  GAFTGEVS   L ++   WVILGHSERR +  ES++++ DK  YAL  GL VI C+GET++++++G T+ VV  Q   +  KI +W NVV+AYEPVWAIGTG  AT   AQ++H E+R +LK
Sbjct:    1 MSRTFFVGGNFKMNGSLESIKAIVERLNASELDPKTEVVISPPFPYLLLAK-ESLKKPTVSVAGQNSFDKGDGAFTGEVSVAQLKDVGAKWVILGHSERRTINKESSEWIADKTKYALDNGLDVILCIGETIDEKKAGKTLDVVRSQLDPVIAKIKDWSNVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLK 193          

HSP 2 Score: 22.3274 bits (46), Expect = 3.698e-43
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            D + A+ A   RIIYGG  NG
Sbjct:  194 DKIGAQ-ADKVRIIYGGSVNG 213          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 3.698e-43
Identity = 83/193 (43.01%), Postives = 119/193 (61.66%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MAR FF+GGN+K NG+   +K+IV  LN A                       +  R +  ++AQN + +  GA+TGE S E + ++   WVILGHSERR   NE+++ V +K  +AL  G+KVI C+GETLE+++   T+ VV  Q +A+ EK+ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R++L
Sbjct:    1 MARTFFIGGNFKMNGSKASIKEIVDRLNGASIPSNVEVVIAPPAIYLDHAVALNK-RKEVKISAQNAYSKASGAYTGENSVEQIKDVGAEWVILGHSERRTYFNETDEIVAEKTKFALDSGVKVILCIGETLEEKQQNITLQVVQRQLQAVLEKVQDWTNVVVAYEPVWAIGTGLAATAEDAQDIHHSIREFL 192          

HSP 2 Score: 26.9498 bits (58), Expect = 3.698e-43
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            + +S +VA S RI+YGG  NG
Sbjct:  194 EKLSRDVADSVRILYGGSANG 214          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ZYGBA6.966e-4545.08Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_TAESO1.211e-4446.70Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_GRAVE1.211e-4445.85Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_CAEEL2.009e-4447.94Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_LEIME5.794e-4448.92Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_ENTHI7.545e-4447.00Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPIS_YEAST9.841e-4445.36Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_KLUMA9.841e-4444.56Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_YARLI3.698e-4345.88Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_KLULA3.698e-4343.01Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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