FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 1.066e-42
Identity = 80/193 (41.45%), Postives = 120/193 (62.18%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MAR+FFVGGN+K NGT +++  I+  LN+A+                     ++  +    + AQN + +  GAFTGE  A  ++++   W + GHSERR ++ ES++F+ +K  +AL  G+KVI C+GETLE+R+ G T+ V A Q  A+++ +S+W N+V+AYEPVWAIGTG  ATP  A+E H  +R  L
Sbjct:    1 MARQFFVGGNFKANGTKQQITSIIDNLNKADLPKDVEVVICPPALYLGLAVEQNK-QPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVSDWSNIVVAYEPVWAIGTGLAATPEDAEETHKGIRAHL 192          

HSP 2 Score: 26.9498 bits (58), Expect = 1.066e-42
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGGFCNG 717
            ++ AE A  TRI+YGG  NG
Sbjct:  195 SIGAEQAEKTRILYGGSVNG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.134e-42
Identity = 90/205 (43.90%), Postives = 124/205 (60.49%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSVLKLQHQL 688
            MARK+FV  NWKCNGT E +K + ++ N  +                     K LL+S F    QN      G++TGEVSAE+  +L+I +VI+GH ERR   +E+++ V +K+  +L   LK + C GE+LEQRE   T+ V+ +Q KA  + I N+DNV+LAYEP+WAIGTGK ATP QAQ VH E+RK +K     K  +Q+
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRK-LLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQI 204          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.134e-42
Identity = 90/205 (43.90%), Postives = 124/205 (60.49%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSVLKLQHQL 688
            MARK+FV  NWKCNGT E +K + ++ N  +                     K LL+S F    QN      G++TGEVSAE+  +L+I +VI+GH ERR   +E+++ V +K+  +L   LK + C GE+LEQRE   T+ V+ +Q KA  + I N+DNV+LAYEP+WAIGTGK ATP QAQ VH E+RK +K     K  +Q+
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRK-LLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQI 204          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.481e-42
Identity = 91/188 (48.40%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  101 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            NWKCNG+   +  ++ TLN A                      + L    F +AAQN  + + GAFTGEVS ++L +  I WV+LGHSERR    E+N+ V +KVA A + G  VI CVGET E+RE+G T AVV  Q  A+A+K+S   W  VV+AYEPVWAIGTGKVATP QAQEVH  LR+W+++
Sbjct:   12 NWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKAR-LTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRS 197          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.526e-42
Identity = 88/188 (46.81%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  101 NWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            NWKCNG+ + + +++   N                        + L    F +AAQN  + K GAFTGEVS  +L +  + W++LGHSERRA   E+N+ V DKVA A++ G  VIAC+GETL++RESG T  VV  Q  AIA+K+  ++W  VV+AYEPVWAIGTGKVATP QAQE HA +R W+ +
Sbjct:   11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKER-LSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSS 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.006e-42
Identity = 84/193 (43.52%), Postives = 118/193 (61.14%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MAR FFVGGN+K NG+ + +K+IV  LN A+                       +      V AQN + +  GA+TGE S + + ++   WVILGHSERR   NE ++ V +K A+AL RG+ VI C+GETL+++++G T+ VV  Q   + EK+ +W NVV+AYEPVWAIGTG  AT   AQ++HA +R +L
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTADLADNVEVVICPPATYLDHAV-SLVSHPQVTVGAQNAYTKASGAYTGENSVDQIKDVGAKWVILGHSERRTYFNEDDEQVAEKTAFALERGVSVILCIGETLDEKKAGVTLDVVKRQLTPVLEKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFL 192          

HSP 2 Score: 23.8682 bits (50), Expect = 4.006e-42
Identity = 9/21 (42.86%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            +  S +VA + RI++GG  NG
Sbjct:  194 ERTSRDVADAVRILFGGSANG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.629e-40
Identity = 82/193 (42.49%), Postives = 114/193 (59.07%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            MAR FFVGGN+K NGT + +K+IV  LN A                        + +    V  QN + +  GA+TGE S + L ++   WVILGHSERR   +E +  V +K  +AL +GL VI C+GETLE++++G T+ VV  Q  A+  ++ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R +L
Sbjct:    1 MARTFFVGGNFKLNGTKKSIKEIVDRLNTASLPENVEVVICPPATYLDYTV-SLVSKKQVTVGGQNTYTKASGAYTGENSVDQLKDVGAKWVILGHSERRTYFHEDDKIVAEKTKFALDQGLGVILCIGETLEEKKAGVTLKVVERQLDAVIAEVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYL 192          

HSP 2 Score: 24.6386 bits (52), Expect = 1.629e-40
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            + +  + A  TRI+YGG  NG
Sbjct:  194 EKLGKDTAEKTRILYGGSANG 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.983e-40
Identity = 84/192 (43.75%), Postives = 114/192 (59.38%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL 652
            R FFVGGN K NG+   ++ +   +NE+                        L    F V +QNC+    GAFTGE+SA MLV+L IP+VI+GHSERR + +ES++ +  K  YA+S GL VI C+GE L  R+S +T  +++EQ K  A      W  +V+AYEPVWAIGTG VATP +AQ+ H  +RKW+
Sbjct:    5 RTFFVGGNHKMNGSKSMLESLSKGMNESVENKENVDIFIAPSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNVFSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWI 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.318e-38
Identity = 79/195 (40.51%), Postives = 120/195 (61.54%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN----WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            AR+ F+GGN+KCNG+ + +K  V+++   +                      +  +    +AAQN ++   GA+TGE S EML+++ +  VI+GHSERR ++ E+N+    K   AL +G+ VI C GETL++R++ +T+ V   Q +A+ ++I      W+NVV+AYEPVW+IGTG VATP QA+EVH  LRKW
Sbjct:    3 ARRPFIGGNFKCNGSLDFIKSHVASIASYKIPESVDVVVAPSFVHLSTAIAANTSKC-LKIAAQNVYLEGNGAWTGETSVEMLLDMGLSHVIIGHSERRRIMGETNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKW 196          

HSP 2 Score: 25.409 bits (54), Expect = 9.318e-38
Identity = 12/21 (57.14%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            + V AE A   RIIYGG  NG
Sbjct:  199 EKVCAEGAQHIRIIYGGSANG 219          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.503e-37
Identity = 84/194 (43.30%), Postives = 109/194 (56.19%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKT 658
            +RKFFVG NWK NG  + + +++ T N A                      K  L     VA QNC+    GAFTGE+S  M+ +L + WV+                   KVA+AL+  L VIAC+GE L++RE+G T  VV EQTK IA+ + +W  V+LAY+PVWA GTGK ATP QAQEVH +LR WLK+
Sbjct:    4 SRKFFVGRNWKMNGRKKCLGELIGTQNAATVPADTKVICALATAYNELARQK--LAPKIAVAPQNCYKVTNGAFTGEISPGMVKDLGVTWVV-------------------KVAHALAERLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVILAYDPVWATGTGKTATPQQAQEVHKKLRGWLKS 176          

HSP 2 Score: 24.2534 bits (51), Expect = 3.503e-37
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  658 NVSAEVAASTRIIYGG 705
            N+S  VA ST IIYGG
Sbjct:  177 NISDAVAQSTGIIYGG 192          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CANAL1.066e-4241.45Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_PLAFA1.134e-4243.90Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF71.134e-4243.90Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_TRYCR1.481e-4248.40Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_TRYBB2.526e-4246.81Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_ASHGO4.006e-4243.52Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_CANGA1.629e-4042.49Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_DICDI8.983e-4043.75Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPI2_GIALA9.318e-3840.51Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPISL_HUMAN3.503e-3743.30Putative triosephosphate isomerase-like protein LO... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
back to top