FC930632

Overview
NameFC930632
Unique NameFC930632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.777e-36
Identity = 78/195 (40.00%), Postives = 115/195 (58.97%), Query Frame = 2
Query:   77 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN----WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKW 649
            AR+ F+GGN+KCNG+ + +K  V+ +  A                       +       +AAQN ++   GA+TGE S EML ++ +  VI+GHSERR ++ E+++    K   AL +G+ VI CVGETL++R++  T+ V   Q +A+ +++      W  VV+AYEPVW+IGTG VATP QA+EVH  LRKW
Sbjct:    3 ARRPFIGGNFKCNGSLDFIKSHVAAI-AAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKW 196          

HSP 2 Score: 25.409 bits (54), Expect = 3.777e-36
Identity = 12/21 (57.14%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  655 DNVSAEVAASTRIIYGGFCNG 717
            + V AE A   RIIYGG  NG
Sbjct:  199 EKVCAEGAQHIRIIYGGSANG 219          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 94/201 (46.77%), Postives = 117/201 (58.21%), Query Frame = 2
Query:   80 RKFFVGGNWKCN----GTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            RK FV GNWK N    G      +I+  L +EA                      +S ++    +AAQNC+    GA+TGE+SA ML N    +VILGHSERR   NE+++ V  KV  ALS  L VI CVGETLEQRESG T +VV  Q +   + ++  D  +VV+AYEPVWAIGTGK ATP QAQEVHA +R  +K M
Sbjct:    2 RKKFVAGNWKMNKDLLGAVSLATEILQLLGDEAPTCEVAIAPTFLCQQAVFQVIDESAIK----LAAQNCFYEDQGAYTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDM 198          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.662e-35
Identity = 82/195 (42.05%), Postives = 109/195 (55.90%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGT-SEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            R+  V GNWK N T +E ++   +   +                       K++  S   +AAQNC     GAFTGEVS  ML      +VILGHSERR L  E+N+ V  KV  AL+ GL+VI CVGETL++RE+G T  +V  Q       +S+   +V+AYEPVWAIGTGK AT  QAQ+VHA +R  ++ +
Sbjct:    2 RRTIVVGNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLADVSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKL 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 83/198 (41.92%), Postives = 109/198 (55.05%), Query Frame = 2
Query:   74 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            + RK  + GNWK + T  E KK VS L                         + L   +  + AQN +    GAFTGE+S  ML  + + +VI+GHSERR +  E ++F+  KV   L +G+  I CVGETLE+RE G T  VV +Q +     +   +   VV+AYEPVWAIGTG+VATP QAQEVHA +RK L  M
Sbjct:  400 ITRKLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEM 597          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 81/205 (39.51%), Postives = 113/205 (55.12%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSVLKLQHQL 688
            R+ F+ GNWK + TS E   +V  L  A                       +L +SD  VAAQNC+    GAFTGEVS  +L +    +VI+GHSERR L  ES+ F+  KV   +  GL  I C+GETLE+RE+  T  V+  Q +   E +  +  + +V+AYEPVWAIGTGK AT +QAQ+ H+ +R  +  +   K+  Q+
Sbjct:    2 RRPFIAGNWKLHKTSAEAAALVGELKGALSDVVDRDIVVAPVFTSLAAVIATLEKSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIRSLVNDIFGSKVAQQV 206          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.735e-34
Identity = 82/190 (43.16%), Postives = 109/190 (57.37%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            RK  V GNWK N T +E   +   LNEA                        L+  +   V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIR 191          

HSP 2 Score: 22.7126 bits (47), Expect = 5.735e-34
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  670 EVAASTRIIYGGFC 711
            E+A +T I+YGG C
Sbjct:  201 EIADNTSILYGGSC 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.735e-34
Identity = 82/190 (43.16%), Postives = 109/190 (57.37%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            RK  V GNWK N T +E   +   LNEA                        L+  +   V A+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R
Sbjct:    2 RKNIVAGNWKMNKTLQEGIALAKELNEALANEKPNCDVIICTPFIHLASVTPLVDAAKIGVGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIR 191          

HSP 2 Score: 22.7126 bits (47), Expect = 5.735e-34
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  670 EVAASTRIIYGGFC 711
            E+A +T I+YGG C
Sbjct:  201 EIADNTSILYGGSC 214          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34
Identity = 83/189 (43.92%), Postives = 105/189 (55.56%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELR 643
            RK  V GNWK N T  E  ++ S + +                         ++  +  H+AAQNC     GAFTGEVS  ML      +VI+GHSERR    ++N  V  KV  ALS GL VI CVGETL++RE G T  VV  Q K   E +++  ++V+AYEPVWAIGTGK A+  QAQEVHA +R
Sbjct:    2 RKKIVVGNWKMNKTIAEAVELSSAIIDQLGEVSASCEVGIAPAFPALSGVHGVISGTGIHLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIR 190          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPB (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 83/195 (42.56%), Postives = 106/195 (54.36%), Query Frame = 2
Query:   80 RKFFVGGNWKCN-GTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTM 661
            RK  V GNWK N   +E V    S L   +                     + +  SD  + AQNC     GA+TGEVS  ML +L   ++I+GHSERR    E+N  V  ++  AL  G++VI C+GETLE+RE+G T A+V  Q +     I +  NVVLAYEPVWAIGTGK ATP QA  VHA +R  +  M
Sbjct:    2 RKKIVVGNWKMNKNVAEGVALASSILENLDGGKMACEVGIAPAYPVLSEVGRVIEGSDICLVAQNCHYEDEGAYTGEVSVRMLDSLGCSYIIVGHSERRQYFGETNRTVNLRLKKALEGGMRVILCIGETLEEREAGVTDAIVTAQVREGLADIEDLGNVVLAYEPVWAIGTGKTATPEQADAVHASIRATISDM 196          
BLAST of FC930632 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 87/214 (40.65%), Postives = 115/214 (53.74%), Query Frame = 2
Query:   80 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKTMSVLKLQHQLESSTEVSVM 715
            R+  V GNWK NG+      +++ + +AE                       L  S   + AQ+      GA+TGEVS  ML+  +  +VI+GHSERRA   E+N+ V  K   ALS GL  I CVGETLEQRE+G T  VV  Q  A+   I+  D   +V+AYEPVWAIGTGK ATP  AQEVH  LR+ L   +        +++TEV ++
Sbjct:    2 RRKLVAGNWKMNGSLAANALLLAEI-KAEFGNPACDVAVCVPAPYLAQCLSLLSDSTIALGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAKNA-------QAATEVRIL 207          
The following BLAST results are available for this feature:
BLAST of FC930632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPI1_GIALA3.777e-3640.00Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_CHLT32.990e-3546.77Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_CHLP86.662e-3542.05Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
PGKT_THEMA1.136e-3441.92Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_PELCD5.640e-3439.51Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_BACFR5.735e-3443.16Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN5.735e-3443.16Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_PROA27.366e-3443.92Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_CHLPB9.620e-3442.56Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_HERAR1.641e-3340.65Triosephosphate isomerase OS=Herminiimonas arsenic... [more]

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Properties
Property NameValue
Genbank descriptionC34009F04EF PostHarvC1 Citrus clementina cDNA clone C34009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930632 ID=FC930632; Name=FC930632; organism=Citrus clementina; type=EST; length=718bp
GACAACAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAA
CCAAACAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGC
AACTGGAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTAC
ATTGAATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAA
GCCCTCCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGAT
TTCCATGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTAC
CGGGGAAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCA
TTCTTGGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTT
GTTGGAGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGC
TTGTGTTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTG
TTGTGGCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGAC
AATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGT
TGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGC
TTAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACG
GAGGTTTCTGTAATGGAG
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