FC930634

Overview
NameFC930634
Unique NameFC930634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930634 vs. ExPASy Swiss-Prot
Match: DENR_MAGGR (Translation machinery-associated protein 22 OS=Magnaporthe grisea GN=TMA22 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 56/165 (33.94%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  147 YCEFGPDLEKCKPWLIQNTPDLYPDL--AEELNSREAD-KVGEQLQSTGIXXXXXXXXKAEEVKHLPGGXXXXXXXXXXXXXXXXXXXXXCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDGK 632
            YCE+G  ++KC+ WL +N  ++Y  +   E L +  A   V  Q ++           +A E KH                          +T+V GLE FG++L   +K  GKKFATG+SV K  +  E+I VQGD+S +I EFI + + DVPE  I  ++D K
Sbjct:   26 YCEYGGTVKKCQDWLQRNNQEMYDRIWSPEALQAATAALSVEAQQRAEKDAKKKAAKAEAAEAKHAD-----KLKKSVVTVKRIERNKRKYVTSVSGLESFGLELKKVAKDFGKKFATGSSVTKVASGGEEIVVQGDVSDEIKEFIVEKYKDVPEDNIELVDDKK 185          
BLAST of FC930634 vs. ExPASy Swiss-Prot
Match: DENR_DICDI (Density-regulated protein homolog OS=Dictyostelium discoideum GN=denr PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 3
Query:  411 ITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPT--EKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDGKKVPA 644
            +T + GLEL+G+KLSDA+K + KKF+ G SVVK  +    E ID+QGD   ++V+ I + +P VP + I+F+ED KKV A
Sbjct:  144 VTKITGLELYGIKLSDAAKVMAKKFSCGCSVVKSISNPNSEDIDIQGDFGEELVDLIEEKYPTVPLSEIYFLEDKKKVKA 223          
BLAST of FC930634 vs. ExPASy Swiss-Prot
Match: DENR_CAEEL (Density-regulated protein homolog OS=Caenorhabditis elegans GN=Y47D3A.21 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 49/184 (26.63%), Postives = 81/184 (44.02%), Query Frame = 3
Query:  102 PVRVLYYAVCSLPAEYCEFGPDLEKCKPWLIQNTPDLYPDL------AEELNSREADKVGEQLQSTGIXXXXXXXXKAEEVKHLPGGXXXXXXXXXXXXXXXXXXXXXCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDGKK 635
            P++++Y   CS+P EYC++    + C+ W  QN P+L   L      A + + ++  K G +   TG          A   +    G                      +T +KGL  F + L  ASK   +KFA G+SV    T  ++I +QGD+  D+++ I + W  V +  I  + D K+
Sbjct:   23 PLKMVYCGQCSMPPEYCDYSGQTDVCRAWATQNAPELLEGLEISDEPAADGDEKKKQKRGGKGSKTG----------AAAAQAAASGGKKKGGGPQKVTLQREPRGKKSVTVIKGLATFDIDLKVASKLFAQKFACGSSV----TGADEIVIQGDVKDDLLDLIPEKWKQVTDEQIDDLGDKKR 192          
The following BLAST results are available for this feature:
BLAST of FC930634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DENR_MAGGR3.208e-1633.94Translation machinery-associated protein 22 OS=Mag... [more]
DENR_DICDI1.032e-1448.75Density-regulated protein homolog OS=Dictyostelium... [more]
DENR_CAEEL1.141e-1326.63Density-regulated protein homolog OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionC34009F06EF PostHarvC1 Citrus clementina cDNA clone C34009F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930634 ID=FC930634; Name=FC930634; organism=Citrus clementina; type=EST; length=731bp
AAGCGTGTCGTTTTGCTCTTCTTACAAAATTCCCGTCACTCGGCAGTTGG
CAAAGAGAGTAGTGGAGCTCTGTCTTTGAAGTAATGGCGGAAAAACCGCA
GCCGGTTCGCGTACTGTACTATGCGGTGTGCAGTTTACCGGCGGAGTACT
GTGAATTCGGACCCGATCTCGAGAAATGCAAGCCCTGGCTAATTCAAAAC
ACACCGGACCTTTACCCCGATCTTGCCGAAGAGTTAAATTCGAGGGAAGC
CGATAAAGTCGGCGAGCAGTTACAATCAACTGGCATTTCCTCTCCTGCTT
CTTCAGCTCCTAAGGCAGAAGAAGTTAAACACCTTCCTGGTGGAAAGATA
AAGAAAAAGGATAAGAAAGAAGTTGTTATCGAAAAGGTTGTTCGTAACAA
ACGGAAATGTATCACTACAGTTAAAGGCCTGGAACTTTTTGGTGTTAAAC
TTAGTGATGCTTCAAAGAAACTTGGGAAAAAGTTTGCTACAGGAGCCTCT
GTTGTTAAGGGACCAACTGAGAAGGAGCAAATTGATGTCCAAGGAGACAT
ATCATACGACATCGTGGAGTTTATAACAGATACCTGGCCTGATGTTCCTG
AAACTGCAATCTTCTTCATCGAAGATGGAAAGAAAGTGCCTGCTGTTTGA
TTGAAATAGTAGCTCATGGAAAAATGGAATATGGTATCTTCCTTCCTCTT
CACNAGTCTCTCACGAGATTTTTATACGTAG
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