FC930638

Overview
NameFC930638
Unique NameFC930638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9784 contig Ccv1_Contig9784:338..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 58/136 (42.65%), Postives = 69/136 (50.74%), Query Frame = 1 
Query:    7 PDTSFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 405
            P   FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   75 PPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-LSSVLISIQSL-MTENPYHNEPGFE----QERHSGDSKNYNE 201
[Close]
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 55/124 (44.35%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:   43 MDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 405
            M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:  130 MTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-ISSVLISIQSL-MTENPYHNEPGFE----QERHPGDSKNYNE 244
[Close]
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 55/124 (44.35%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:   43 MDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 405
            M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:  130 MTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-ISSVLISIQSL-MTENPYHNEPGFE----QERHPGDSKNYNE 244
[Close]
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 55/124 (44.35%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:   43 MDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 405
            M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:  128 MTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-ISSVLISIQSL-MTENPYHNEPGFE----QERHPGDSKNYNE 242
[Close]
BLAST of FC930638 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 58/136 (42.65%), Postives = 69/136 (50.74%), Query Frame = 1 
Query:    7 PDTSFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 405
            P   FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   88 PPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-ISSVLISIQSL-MTENPYHNEPGFE----QERHPGDSKNYNE 214
The following BLAST results are available for this feature:
BLAST of FC930638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBE2Z_XENLA1.903e-1742.65Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_RAT3.245e-1744.35Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE3.245e-1744.35Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN3.245e-1744.35Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBE2Z_DANRE4.239e-1742.65Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]

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Properties
Property NameValue
Genbank descriptionC34009F10EF PostHarvC1 Citrus clementina cDNA clone C34009F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930638 ID=FC930638; Name=FC930638; organism=Citrus clementina; type=EST; length=671bp
GATTTGCCAGATACTAGTTTTGTGAGGGTGTATGAATCAAGGATGGATCT
TTTGAGGGCCGTAATTGTAGGGGCAGAGGGAACTCCCTACCATGATGGCC
TGTTCTTCTTTGATGTTTTCTTCCCTAGTGATTATCCTAATGTACCTCCG
AATGTCCACTACCACTCCGGTGGCCTTCGACTCAATCCAAATTTATATAA
TTGTGGGAAGGTATGCCTTAGTCTTCTTAACACCTGGGATGGTGATAAGA
ATGAGAAGTGGATCCCTTCTATGTCAACCATGCTACAAGTTTTGGTCTCT
ATACAAGCACTGATCTTGAATGAAAGGCCTTACTTTAACGAACCTGGTTG
GGAAAGTATGGACAGCATGGAAGAAGGTGAAAGACAGTCCAATATGTACA
ATGAGCGTGCATTTATCTTGTCACTGAAGACAATGCTGTACACTGTCAGG
AGACCTCCAAAGCATTTCAATGATTTTGTTAGTGGCCACTTTTACCAGCG
TGCACATGATATTCTGGCTGCATGTAAAGCATACATGGATGGTGCTGAAG
TGGGTTCTCTGGTCAAAGGTCGTGTGCAGAAAATTCACAAGGGCAAAAAG
AGCTGCTCACCGGATTTTAAGGCCTCCATAGCTGGGCATTGTGATCTTCT
CATAAAAGATTTACATATATC
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