FC930642

Overview
NameFC930642
Unique NameFC930642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.646e-59
Identity = 105/172 (61.05%), Postives = 126/172 (73.26%), Query Frame = 2
Query:  116 AFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 631
            A GWAARD SG LSPF F+RR   E DVT KV +CGICH+DLH IKNEWGNA+YP+VPGHEIVGVV  VG+ V++FK GD VGVG  V SCR+CDSC    ENYCP +++T     + G  T GG+SD MV  + +V+R+P   P D  APLLCAG+TVYSP+  YGL+ PG
Sbjct:    8 ALGWAARDASGHLSPFSFTRRVQEEDDVTIKVLYCGICHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPG 179          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.385e-58
Identity = 102/172 (59.30%), Postives = 126/172 (73.26%), Query Frame = 2
Query:  104 HPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL 619
            H +   GWAA D SG + PF F RR  G  DVT KV +CG+CH+DLH I N+WG  +YP+VPGHEI GVVT+VG+ V+ FKVGD+VGVGC+  SC  C+ C    ENYC KV +TY   + DG+ITYGGYS  +VA + FVVRIP+  PLDA APLLCAGITVYSP++ +G+
Sbjct:    7 HTQTVSGWAAMDESGKIVPFVFKRRENGVDDVTIKVKYCGMCHTDLHFIHNDWGITMYPVVPGHEITGVVTKVGTNVAGFKVGDRVGVGCIAASCLDCEHCRRSEENYCDKVALTYNGIFWDGSITYGGYSGMLVAHKRFVVRIPDTLPLDAAAPLLCAGITVYSPMKQHGM 178          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.173e-57
Identity = 103/177 (58.19%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 631
            E  K   G+AARD+SG LSP+ ++ R  G +DV  +V +CGICHSDL  + NE G + YP+VPGHE+VGVVTE+GS+V KFKVG+ VGVGC+VGSCRSC +C   +E YC K I TY    HDGT T GG++ +MV D+ FVVRIPE  PL+  APLLCAG+TVYSP++ +G+ +PG
Sbjct:    5 ESEKTVTGYAARDSSGHLSPYTYTLRNKGPEDVIVRVIYCGICHSDLVQMHNEMGMSNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPG 181          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.613e-57
Identity = 102/177 (57.63%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 631
            E  +   G+AARD+SG LSP+ ++ R  G +DV  +V +CGICHSDL  + NE G + YP+VPGHE+VGVVTE+GS+V KFKVG+ VGVGC+VGSCRSC +C   +E YC K I TY    HDGT T GG++ +MV D+ FVVRIPE  PL+  APLLCAG+TVYSP++ +G+ +PG
Sbjct:    5 ESERTVTGYAARDSSGHLSPYTYTLRNKGPEDVIVRVIYCGICHSDLVQMHNEMGMSNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPG 181          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.412e-57
Identity = 101/177 (57.06%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 631
            E  K   G+AARD+SG LSP+ ++ R  G +DV  KV +CGICHSDL  ++NE G + YP+VPGHE+VG+VTE+GS+V KFKVG+ VGVGC+VGSCRSC +C   +E YC K I TY    HDGT T GG++ +MV D+ FVVRIPE  PL+  APLLCAG+TV+SP++ + + +PG
Sbjct:    5 ESEKTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPG 181          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.456e-57
Identity = 101/177 (57.06%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 631
            E  K   G+AARD+SG LSP+ ++ R  G +DV  KV +CGICHSDL  ++NE G + YP+VPGHE+VG+VTE+GS+V KFKVG+ VGVGC+VGSCRSC +C   +E YC K I TY    HDGT T GG++ +MV D+ FVVRIPE  PL+  APLLCAG+TV+SP++ + + +PG
Sbjct:    5 ETEKTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPG 181          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.927e-56
Identity = 100/185 (54.05%), Postives = 130/185 (70.27%), Query Frame = 2
Query:   98 QEHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEG------APLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            ++ PK   GWAARD +G+LSPF +  RA G++DV  K+  CGICHSDL  IKNEWGNA YP+VPGHEIVGVV EVGS V++F  GD VGVG +  +CR+C +C    ENYC  ++ ++ +   DG   +GG+S+  V ++ +VVRIP G      APLD  APLLCAG+TVY P+R  GLD+PG+
Sbjct:    2 EQQPKMVTGWAARDANGLLSPFSYPLRAKGDEDVVVKILFCGICHSDLSTIKNEWGNAKYPVVPGHEIVGVVAEVGSSVARFAAGDTVGVGYIASTCRACANCRDGFENYCAGLVPSFNAALPDGATVHGGFSELAVVNQRYVVRIPGGGGGASPAPLDRLAPLLCAGVTVYCPMRRLGLDRPGV 186          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.434e-55
Identity = 102/175 (58.29%), Postives = 127/175 (72.57%), Query Frame = 2
Query:  110 KNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            K A GWAARD SGVLSP+ ++ R+TG  DV  KV  CGICH+D+H IKN+ G + YP+VPGHE+VG V EVGS VSKF VGD VGVG +VG C SC  C+ +LE YC K I +Y   Y DG  T GG++DTM+ ++ FVV+IPEG  ++  APLLCAG+TVYSPL  +GL   G+
Sbjct:    9 KKALGWAARDPSGVLSPYSYTLRSTGADDVYIKVICCGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVLEVGSDVSKFTVGDVVGVGVVVGCCGSCKPCSSELEQYCNKRIWSYNDVYTDGKPTQGGFADTMIVNQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLMASGL 183          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.445e-55
Identity = 99/174 (56.90%), Postives = 128/174 (73.56%), Query Frame = 2
Query:  110 KNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 631
            K+A GWAARD SG+LSP+ ++ R TG +DV  KV +CG+CHSDLH +KN+ G + YP+VPGHE+VG V EVG+ VSKFKVGD VGVG +VGSCR+C  C  ++E YC K I      Y DG  T GG++++MV D++FVV+IPEG   +  APLLCAGITVYSP   +G ++ G
Sbjct:    8 KSAIGWAARDPSGLLSPYTYTLRNTGPEDVQVKVLYCGLCHSDLHQVKNDLGMSNYPLVPGHEVVGKVVEVGADVSKFKVGDTVGVGLLVGSCRNCGPCKREIEQYCNKKIWNCNDVYTDGKPTQGGFANSMVVDQNFVVKIPEGMAPEQAAPLLCAGITVYSPFNHFGFNQSG 181          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.171e-55
Identity = 101/178 (56.74%), Postives = 125/178 (70.22%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            E  K   GWAARD SGVLSP+ ++ R TG +DV  KV +CG+CH+DLH +KN+ G + YP+VPGHE+VG V EVG  VSKFKVGD VGVG +VGSCR+C  C  D+E YC K I      Y DG  T GG++ +MV D+ FVV+IPEG   +  APLLCAGITVYSPL  +G  + G+
Sbjct:    5 EVEKTTIGWAARDPSGVLSPYTYTLRNTGPEDVEVKVLYCGLCHTDLHQVKNDLGMSNYPLVPGHEVVGEVVEVGPDVSKFKVGDTVGVGLLVGSCRNCGPCKRDIEQYCNKKIWNCNDVYTDGKPTQGGFAKSMVVDQKFVVKIPEGMAPEQAAPLLCAGITVYSPLNHFGFKQSGL 182          
The following BLAST results are available for this feature:
BLAST of FC930642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
CAD8A_ORYSJ3.646e-5961.05Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH6_ORYSJ1.385e-5859.30Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CADH2_PICAB1.173e-5758.19Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH7_PICAB2.613e-5757.63Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH_PINTA3.412e-5757.06Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA4.456e-5757.06Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH9_ORYSJ4.927e-5654.05Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH4_ARATH1.434e-5558.29Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
CADH2_TOBAC2.445e-5556.90Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH1_TOBAC4.171e-5556.74Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionC34009G02EF PostHarvC1 Citrus clementina cDNA clone C34009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930642 ID=FC930642; Name=FC930642; organism=Citrus clementina; type=EST; length=692bp
GGATTGCACCTTGTTTATTCAAATACCCTGGACGTCAAACTAAGCCAACA
AGCACCAATATCATTAAATTCATTCTGAAATGGGGCAAGCACCGGAGCAA
GAGCACCCTAAGAACGCCTTTGGATGGGCTGCCAGGGACACTTCTGGCGT
TCTCTCCCCCTTTCACTTCTCCAGAAGAGCAACGGGAGAGAAGGATGTGA
CATTCAAAGTAACTCACTGTGGGATATGTCATTCAGATCTTCACTTGATC
AAAAATGAATGGGGCAATGCCATTTACCCAATCGTCCCCGGACATGAGAT
TGTGGGCGTAGTGACAGAGGTCGGAAGCAAAGTGAGTAAATTCAAAGTCG
GAGACAAAGTGGGAGTAGGATGCATGGTGGGATCATGCCGCTCTTGTGAT
AGCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAGTTATAATGACCTA
TGCCAGCAAGTACCATGATGGAACCATCACATACGGAGGCTACTCTGACA
CTATGGTTGCCGATGAGCACTTTGTGGTCCGTATTCCTGAAGGCGCACCA
CTTGACGCCACTGCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTCC
GTTGAGATTCTATGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTCG
GCTTGGGCGGTCTAGGCCATGTCGCTGTCAAATCGCAAGGCT
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