FC930642

Overview
NameFC930642
Unique NameFC930642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15191 contig Ccv1_Contig15191:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.214e-54
Identity = 98/178 (55.06%), Postives = 124/178 (69.66%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            E  +   GWAARD SG+LSP+ ++ R TG +DV  ++  CGICH+DLH  KN+ G + YP+VPGHE+VG V EVGS VSKF VGD VGVGC+VG C  C  C  DLE YCPK I +Y   Y +G  T GG++   V  + FVV+IPEG  ++  APLLCAG+TVYSPL  +GL +PG+
Sbjct:    5 EAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGL 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.704e-54
Identity = 98/178 (55.06%), Postives = 127/178 (71.35%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            E  +   GWAARD SGVLSP+ ++ R TG +DV  +V  CGICH+D+H IKN+ G + YP+VPGHE+VG V EVGS+V+KF+ GD VGVGC+VGSC +C  C  D+E YC K I +Y   Y DG  T GG++  MV D+ FVV+IP+G   +  APLLCAG+TVYSPL  +GL + G+
Sbjct:    5 EVERKTVGWAARDPSGVLSPYEYTLRNTGPQDVYVEVMCCGICHTDVHQIKNDLGMSNYPMVPGHEVVGEVVEVGSEVTKFRAGDVVGVGCIVGSCGNCRPCNSDIEQYCNKKIWSYNDVYPDGKPTQGGFAGAMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLNHFGLKQSGL 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.099e-53
Identity = 97/173 (56.07%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL 619
            E  +   GWAARD SGVLSP+ ++ R TG +DV  K+ +CGICH+D+H IKN+ G + YP+VPGHE+VG V EVGS V+KFKVGD VG G +VG C++C  C  D+E YC K I +Y   Y DG  T GG+S  MV D+ FVV+IP+G   +  APLLCAG+TVYSPL  +GL
Sbjct:    5 EAERKTTGWAARDPSGVLSPYTYTLRETGPEDVFIKIIYCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEVGSDVTKFKVGDCVGDGTIVGCCKTCRPCKADVEQYCNKKIWSYNDVYTDGKPTQGGFSGHMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGL 177          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.659e-53
Identity = 97/178 (54.49%), Postives = 124/178 (69.66%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            E  +   GWAARD SGVLSP+ +S R TG +D+  KV  CGICHSD+H IKN+ G + YP+VPGHE+VG V EVGS+V+K++VGD+VG G +VG CRSC  C  D E YC K I  Y   Y DG  T GG++  +V  E FVV+IP+G   +  APL+CAG+TVYSPL  +GL + G+
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGL 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.697e-53
Identity = 94/175 (53.71%), Postives = 122/175 (69.71%), Query Frame = 2
Query:  110 KNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            +   GWAARD +G LSP+ ++ R TG +DV  KV +CGICH+D+H  KN  G + YP+VPGHE+VG V EVG +V+K+ VGD VGVG +VG CR C  C  ++E YC K I +Y   Y DG  T GG++ TMV D+ FVV+IP G   +  APLLCAG+TVYSPL+ +GL  PG+
Sbjct:    8 RKVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVAKYGVGDVVGVGVIVGCCRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGL 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.697e-53
Identity = 99/185 (53.51%), Postives = 125/185 (67.57%), Query Frame = 2
Query:   80 MGQAPEQEHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            MG     E  K   GWAARD +G LSP+ ++ R TG +DV  KV +CGICH+DLH  KN  G + YP+VPGHE+VG V EVG +VSK+ VGD VGVG +VG CR C  C  ++E YC K I +Y   Y DG  T GG++ +MV D+ FVV+IP G   +  APLLCAG+TVYSPL+ +GL  PG+
Sbjct:    1 MGSVDASE--KTITGWAARDATGHLSPYTYNLRRTGAEDVVLKVLYCGICHTDLHQTKNHLGASKYPMVPGHEVVGEVVEVGPEVSKYSVGDVVGVGVIVGCCRDCRPCKANVEQYCNKKIWSYNDVYTDGKPTQGGFAGSMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLMTPGL 183          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.697e-53
Identity = 96/178 (53.93%), Postives = 124/178 (69.66%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            E  +   GWAARD SGVLSP+ +S R TG +D+  KV  CG+CHSD+H IKN+ G + YP+VPGHE+VG V EVGS+V+K++VGD+VG G +VG CRSC  C  D E YC K I  Y   Y DG  T GG++  +V  E FVV+IP+G   +  APL+CAG+TVYSPL  +GL + G+
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGVCHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGL 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.136e-52
Identity = 94/178 (52.81%), Postives = 128/178 (71.91%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            E  +   GWAA D++G L+P+ +S R TG +DV  KV  CG+CH+D+H IKN+ G + YP+VPGHE+VG V EVGS V++FKVGD VGVG +VGSC++C  C  ++E YC K I +Y   Y DG  T GG++++MV  + FVVRIP+G   +  APLLCAG+TVYSPL+ +GL + G+
Sbjct:    5 ETERKIVGWAATDSTGHLAPYTYSLRDTGPEDVFIKVISCGVCHTDIHQIKNDLGMSHYPMVPGHEVVGEVVEVGSDVTRFKVGDVVGVGVIVGSCKNCHPCKSEIEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVHQKFVVRIPDGMSPEQAAPLLCAGLTVYSPLKHFGLKQSGL 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.484e-52
Identity = 93/175 (53.14%), Postives = 127/175 (72.57%), Query Frame = 2
Query:  110 KNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            +   G AA+D SG+L+P+ ++ R TG  DV  K+ +CG+CHSDLH IKN+ G + YP+VPGHE+VG V EVGS V++FKVG+ VGVG +VG C+SC +C  ++E YC K I +Y   Y DG IT GG++++ V ++ FVV+IPEG   +  APLLCAG+TVYSPL  +GL  PG+
Sbjct:    9 RTTVGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGL 183          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.484e-52
Identity = 92/173 (53.18%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  113 NAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 631
            N   WAARD SG+LSP+ F+RRA    DV+ ++THCG+C++D+   +N   N++YP+VPGHEI GVVTEVG+ V  FKVGD VGVG  V SCR C++C   LENYC + + T+     DGT+T GGYS  +V  E +  +IP+G PL+  APLLCAGITVYSP+  + +++PG
Sbjct:    9 NCDAWAARDPSGILSPYKFNRRAVQSDDVSLRITHCGVCYADVAWTRNILNNSMYPLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPG 181          
The following BLAST results are available for this feature:
BLAST of FC930642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
CADH5_ARATH1.214e-5455.06Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
CADH1_OCIBA2.704e-5455.06Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH1_ARACO5.099e-5356.07Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH_EUCGL6.659e-5354.49Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH_MAIZE8.697e-5353.71Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CADH_LOLPR8.697e-5353.51Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
CADH2_EUCGU8.697e-5353.93Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH_POPDE1.136e-5252.81Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
CADH_MEDSA1.484e-5253.14Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH1_ORYSJ1.484e-5253.18Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC34009G02EF PostHarvC1 Citrus clementina cDNA clone C34009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930642 ID=FC930642; Name=FC930642; organism=Citrus clementina; type=EST; length=692bp
GGATTGCACCTTGTTTATTCAAATACCCTGGACGTCAAACTAAGCCAACA
AGCACCAATATCATTAAATTCATTCTGAAATGGGGCAAGCACCGGAGCAA
GAGCACCCTAAGAACGCCTTTGGATGGGCTGCCAGGGACACTTCTGGCGT
TCTCTCCCCCTTTCACTTCTCCAGAAGAGCAACGGGAGAGAAGGATGTGA
CATTCAAAGTAACTCACTGTGGGATATGTCATTCAGATCTTCACTTGATC
AAAAATGAATGGGGCAATGCCATTTACCCAATCGTCCCCGGACATGAGAT
TGTGGGCGTAGTGACAGAGGTCGGAAGCAAAGTGAGTAAATTCAAAGTCG
GAGACAAAGTGGGAGTAGGATGCATGGTGGGATCATGCCGCTCTTGTGAT
AGCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAGTTATAATGACCTA
TGCCAGCAAGTACCATGATGGAACCATCACATACGGAGGCTACTCTGACA
CTATGGTTGCCGATGAGCACTTTGTGGTCCGTATTCCTGAAGGCGCACCA
CTTGACGCCACTGCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTCC
GTTGAGATTCTATGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTCG
GCTTGGGCGGTCTAGGCCATGTCGCTGTCAAATCGCAAGGCT
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