FC930642

Overview
NameFC930642
Unique NameFC930642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15191 contig Ccv1_Contig15191:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.530e-52
Identity = 96/178 (53.93%), Postives = 123/178 (69.10%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            E  +   GWAARD SGVLSP+ +S R TG +D+  KV  CGICHSD+H IKN+ G + YP+VPGHE+VG V EVGS+V+K++VGD+VG G +VG CRSC  C  D E YC K I  Y   Y DG  T GG++  +V  E FVV+IP+G   +  APL+CAG+TVY PL  +GL + G+
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYRPLVRFGLKQSGL 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.637e-52
Identity = 92/175 (52.57%), Postives = 123/175 (70.29%), Query Frame = 2
Query:  110 KNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            +   GWAARD +G L+P+ ++ R+TG +DV  KV +CGICH+D+H  KN  G + YP+VPGHE+VG V EVG +V+K+ VGD VGVG +VG CR C  C  ++E YC K I +Y   Y DG  T GG++ TMV D+ FV++IP G   +  APLLCAG+TVYSPL+ +GL  PG+
Sbjct:    8 RKVVGWAARDATGHLAPYTYTLRSTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYGVGDVVGVGVIVGCCRECKPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVMKIPAGLAPEQAAPLLCAGVTVYSPLKAFGLTTPGL 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.637e-52
Identity = 93/175 (53.14%), Postives = 121/175 (69.14%), Query Frame = 2
Query:  110 KNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            K   GWAARD SG L+P++++ R TG +DV  KV +CGICH+D+H  KN  G + YP+VPGHE+VG V EVG +V+K+  GD VGVG +VG CR C  C  ++E YC K I +Y   Y DG  T GG++  MV D+ FVV+IP G   +  APLLCAG+TVYSPL+ +GL  PG+
Sbjct:    8 KTVTGWAARDASGHLTPYNYTLRKTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYSAGDVVGVGVIVGCCRECHPCKANVEQYCNKRIWSYNDVYTDGRPTQGGFASAMVVDQKFVVKIPAGLAPEQAAPLLCAGLTVYSPLKHFGLMSPGL 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.368e-50
Identity = 88/173 (50.87%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  113 NAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 631
            N   WAARD SG+LSP+ F+RR    +DV+ ++THCG+C++D+   +N + ++IYP+VPGHEI GVVTEVG+ V  FKVGD VGVG  V SC+ C++C   LEN+C K ++TY S   DGT+T GGYS  ++  + +  +IP   PL   APLLCAGITVY+P+  + +++PG
Sbjct:    9 NCDAWAARDPSGILSPYKFNRREVQSEDVSLRITHCGVCYADVIWTRNMFNDSIYPLVPGHEIAGVVTEVGADVKGFKVGDHVGVGVYVNSCQDCENCNSSLENHCSKCVVTYNSVDSDGTVTKGGYSSHILVHQRYCFKIPADYPLSKAAPLLCAGITVYTPMIRHNMNQPG 181          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.000e-50
Identity = 94/178 (52.81%), Postives = 123/178 (69.10%), Query Frame = 2
Query:  101 EHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGM 634
            E  +   GWAARD SGVLSP+ +S R TG +D+  KV  CGICHSD+H IKN+ G + YP+VPGHE+VG V EVGS+V+K++VGD+VG G +VG CRSC  C  D E YC K I  Y   Y DG  T GG++  +V  + FVV+IP+G   +  A ++CAG+TVYSPL  +GL + G+
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCGPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGQRFVVKIPDGLESEQDA-VMCAGVTVYSPLVRFGLKQSGL 181          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.622e-46
Identity = 88/164 (53.66%), Postives = 111/164 (67.68%), Query Frame = 2
Query:  125 WAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYC-PKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY 613
            +AA   +  L+    +RR  G  DV   +   GICHSD+H +K EWG   YP+VPGHEI GVVT VGS+V+K++ GD+VGVGC V SCR C+SC   +E YC P    TY S   DG  T GGYS+ +V DE++V+RIP+  PLD  APLLCAGIT+YSPLR +
Sbjct:    7 YAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHW 170          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.622e-46
Identity = 88/164 (53.66%), Postives = 111/164 (67.68%), Query Frame = 2
Query:  125 WAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYC-PKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY 613
            +AA   +  L+    +RR  G  DV   +   GICHSD+H +K EWG   YP+VPGHEI GVVT VGS+V+K++ GD+VGVGC V SCR C+SC   +E YC P    TY S   DG  T GGYS+ +V DE++V+RIP+  PLD  APLLCAGIT+YSPLR +
Sbjct:    7 YAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHW 170          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.885e-46
Identity = 83/169 (49.11%), Postives = 116/169 (68.64%), Query Frame = 2
Query:  125 WAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 631
            WAARD SG+LSP   +RR+    DV+  +THCG+C++D+   +N+ G++ YP+VPGHEI G+VT+VG  V +FKVGD VGVG  V SCR C+ C    E  C K + T+    HDG++T GGYS  +V  E +  +IP   PL++ APLLCAGITVY+P+  + +++PG
Sbjct:   14 WAARDPSGLLSPHTITRRSVTTDDVSLTITHCGVCYADVIWSRNQHGDSKYPLVPGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTFNGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQPG 182          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.974e-41
Identity = 79/150 (52.67%), Postives = 99/150 (66.00%), Query Frame = 2
Query:  173 RRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPK-VIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL 619
            RR     DV   +   GICHSD+H   +EWG  I+P+VPGHEI GVVT VG+KV+K  VGD+VGVGC V SC  C+ C    E +C K V+ TY S  +DG  TYGGYS  +V  + FVVRIP+   +D  +PLLCAGIT YSPL+ + +
Sbjct:   26 RRGLRPHDVLIDIKFSGICHSDIHSAFDEWGGGIFPMVPGHEIAGVVTAVGTKVTKLAVGDRVGVGCFVDSCGECEYCLNAEEQFCTKGVVQTYNSVDYDGNPTYGGYSQKIVVTDRFVVRIPDRLEMDVASPLLCAGITTYSPLKHWNV 175          
BLAST of FC930642 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.473e-39
Identity = 79/156 (50.64%), Postives = 98/156 (62.82%), Query Frame = 2
Query:  152 LSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGT-ITYGGYSDTMVADEHFVVRIPE-GAPLDATAPLLCAGITVYSPLRFY 613
            L P   +RR  G  DV  ++ +CG+CHSDLH +++EW   +YP VPGHEIVG V  VG +V K+  GD VGVGC+V SC+ C+ C   LENYC  +  TY S   D    T GGYS  +V  E +V+RI      L A APLLCAGIT YSPLR +
Sbjct:   15 LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHW 170          
The following BLAST results are available for this feature:
BLAST of FC930642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
CADH1_EUCGU2.530e-5253.93Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]
CADH_SACOF5.637e-5252.57Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
CADH2_ORYSJ5.637e-5253.14Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
CADH4_ORYSJ2.368e-5050.87Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
CADH_EUCBO9.000e-5052.81Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
ADHC_MYCTU4.622e-4653.66NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO4.622e-4653.66NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH1_ARATH7.885e-4649.11Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
ADHA_BACSU9.974e-4152.67Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
YAHK_ECOLI5.473e-3950.64Uncharacterized zinc-type alcohol dehydrogenase-li... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009G02EF PostHarvC1 Citrus clementina cDNA clone C34009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930642 ID=FC930642; Name=FC930642; organism=Citrus clementina; type=EST; length=692bp
GGATTGCACCTTGTTTATTCAAATACCCTGGACGTCAAACTAAGCCAACA
AGCACCAATATCATTAAATTCATTCTGAAATGGGGCAAGCACCGGAGCAA
GAGCACCCTAAGAACGCCTTTGGATGGGCTGCCAGGGACACTTCTGGCGT
TCTCTCCCCCTTTCACTTCTCCAGAAGAGCAACGGGAGAGAAGGATGTGA
CATTCAAAGTAACTCACTGTGGGATATGTCATTCAGATCTTCACTTGATC
AAAAATGAATGGGGCAATGCCATTTACCCAATCGTCCCCGGACATGAGAT
TGTGGGCGTAGTGACAGAGGTCGGAAGCAAAGTGAGTAAATTCAAAGTCG
GAGACAAAGTGGGAGTAGGATGCATGGTGGGATCATGCCGCTCTTGTGAT
AGCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAGTTATAATGACCTA
TGCCAGCAAGTACCATGATGGAACCATCACATACGGAGGCTACTCTGACA
CTATGGTTGCCGATGAGCACTTTGTGGTCCGTATTCCTGAAGGCGCACCA
CTTGACGCCACTGCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTCC
GTTGAGATTCTATGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTCG
GCTTGGGCGGTCTAGGCCATGTCGCTGTCAAATCGCAAGGCT
back to top