FC930645

Overview
NameFC930645
Unique NameFC930645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15192 contig Ccv1_Contig15192:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_SYNSC (Lysyl-tRNA synthetase OS=Synechococcus sp. (strain CC9605) GN=lysS PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.524e-31
Identity = 75/167 (44.91%), Postives = 104/167 (62.28%), Query Frame = 3
Query:  213 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ---FDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPE 704
            +R  R++K   L   G  PYA  +  +H   +LQ  +  L  GEE +     VS           GKLAF TL D++G+IQL+ EK  L + Q   F Q+   VD GD LGVSG+++RT++GELSV V+ + +LTK+L PLPDK+HGL DV+KRYRQRY+D++  P+
Sbjct:    4 LRDTRLEKARTLEELGQGPYALTFSPSHRMAELQVTHADLPKGEERDVS---VSVAGRVMTRRVMGKLAFFTLADETGSIQLFLEKAGLEAQQEGWFKQITSLVDSGDWLGVSGTLRRTDRGELSVKVSDWRMLTKALQPLPDKWHGLADVEKRYRQRYLDLVVSPD 167          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_PROM9 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9312) GN=lysS PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.524e-31
Identity = 76/177 (42.94%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  213 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEK---------ERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADV 716
            +R  R++K   L SKG   YA  +  +H+   L + + +L NG+E   E+  VS           GK+AF T+ D  G IQLY +K         ++LLS  F+ +K  VDIGD +GV G++K+T KGELS+ V  + +L+KSL PLPDK+HGLTD++KRYRQRY+D+I  P   +V
Sbjct:    4 IREARLQKANSLVSKGFASYAESFSVSHTTKFLIQKFDYLENGQE---EDFSVSLAGRVMAKRVMGKIAFFTISDQEGQIQLYLDKRMINCNLENQKLLS--FEDIKEIVDIGDWIGVYGTIKKTNKGELSIKVEKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPHSKNV 175          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_PROM2 (Lysyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9215) GN=lysS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.875e-31
Identity = 74/177 (41.81%), Postives = 109/177 (61.58%), Query Frame = 3
Query:  213 VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYC---------EKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADV 716
            ++  R++K   L SKG   YA  +  +++ + L + + +L NG+E++     VS           GK+AF T+ D  G IQLY          EK++LLS  F+ +K  VDIGD +GV G++K+T KGELS+ V  + +L+KSL PLPDK+HGLTD++KRYRQRY+D+I  P   +V
Sbjct:    4 IKEARLQKARSLVSKGFASYAQSFKVSNTTSFLLQEFDYLENGQEADFS---VSVAGRVLAKRVMGKIAFFTISDQEGQIQLYLDKRIINLNLEKQKLLS--FEDIKEIVDIGDWIGVYGTIKKTNKGELSIKVEKWEMLSKSLQPLPDKWHGLTDIEKRYRQRYLDLIVNPHSKNV 175          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_BACST (Lysyl-tRNA synthetase OS=Bacillus stearothermophilus GN=lysS PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.875e-31
Identity = 69/168 (41.07%), Postives = 109/168 (64.88%), Query Frame = 3
Query:  201 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPE 704
            D+  VR  ++KK+EEL   G++P+  +++RTH A +L E+Y  L+  EE   +   V+           GK  F  ++D +G IQ+Y  ++ +   Q++  K+  D+GDI+GV G+M +T+ GELS+ V+S+  LTK+L PLP+KYHGL D+++RYRQRY+D+I  PE
Sbjct:    8 DQLRVRREKLKKIEEL---GVDPFGKRFERTHKAEELFELYGDLSK-EELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKIS-DLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPE 170          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_CARHZ (Lysyl-tRNA synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=lysS PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.901e-30
Identity = 71/166 (42.77%), Postives = 106/166 (63.86%), Query Frame = 3
Query:  222 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVF--VDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVAD 713
            +R++K+ ELR  G+EPY  K++RTH+A ++ + +  L +          V            GK +F  ++D SG IQ+Y  +  L  D +   K+F  +DIGDI+GV+G + +T+KGE++V ++SF IL KSL PLP+K+HGLTDV+ RYRQRYVD+I  PEV +
Sbjct:   12 VRLEKLSELRKMGIEPYGGKFERTHTAKEILDNFEQLVDKT--------VKIAGRIMAKRGHGKASFAHIQDMSGKIQIYARQNELGIDAY---KLFEKLDIGDIIGVTGHVFKTQKGEITVWLSSFEILAKSLRPLPEKWHGLTDVELRYRQRYVDLIVNPEVRE 166          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_ENTFA (Lysyl-tRNA synthetase OS=Enterococcus faecalis GN=lysS PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.177e-29
Identity = 66/164 (40.24%), Postives = 102/164 (62.20%), Query Frame = 3
Query:  222 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVAD 713
            +R +K+E LR +G++P+  ++DRTH++ +L E Y +    EE +  N  VS           GK  F  L+D  G IQ+Y  K+++  + ++  K   D+GD  GV+G + +T  GE++V   +  +LTK+L PLPDKYHGLT+V++RYRQRY+D+IS  E  D
Sbjct:   18 VRREKMEALREEGIDPFGKRFDRTHNSAELHEQYDNHTK-EELSEMNTEVSVAGRMMTKRGKGKAGFAHLQDREGQIQIYVRKDQVGDEAYELFK-HADLGDFFGVTGQVMKTNTGEVTVKAQTITLLTKALRPLPDKYHGLTNVEQRYRQRYLDLISNKESFD 179          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_BACHD (Lysyl-tRNA synthetase OS=Bacillus halodurans GN=lysS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 71/165 (43.03%), Postives = 100/165 (60.61%), Query Frame = 3
Query:  219 ALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVAD 713
            A+R +K++ L ++G  P+  K++RT +A  ++E Y    + EE   E   V            GK  F  ++D +G IQ+Y  K+ +    +D L   +DIGDI+GV G   +T+ GELSV V  F +LTKSL PLPDKYHGL DV++RYRQRY+D+I  PEV D
Sbjct:   12 AVRREKLQNLEAEGANPFGGKFERTDTAQSMKEKY-DAKSKEELEEETHEVVLAGRVMTKRGKGKAGFAHIQDLTGQIQIYVRKDAVGDKSYD-LFTSIDIGDIVGVKGVAFKTKVGELSVKVQDFQLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLIVNPEVRD 174          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_STAS1 (Lysyl-tRNA synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=lysS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.243e-29
Identity = 68/162 (41.98%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  222 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGE-ESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPE 704
            +R +K++EL   G++P+  K+DRT  A  L E +   +  E     E  HVS           GK  F  ++D SG IQ+Y  K+++  DQF  +    D+GDI+GV G M +T  GELSV   SF +LTK+L PLPDK+HGL D+++RYRQRY+D+I+  +
Sbjct:   11 VRRQKLQELYDLGIDPFGQKFDRTSMATPLHEDWDQFSKEELHEKEEESHVSIAGRLMTKRGKGKAGFAHVQDLSGQIQIYVRKDQVGEDQF-AIWNSADLGDIVGVEGVMFKTNTGELSVKAQSFTLLTKALRPLPDKFHGLQDIEQRYRQRYLDLITNQD 171          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_OCEIH (Lysyl-tRNA synthetase OS=Oceanobacillus iheyensis GN=lysS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.207e-28
Identity = 68/161 (42.24%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  222 LRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPE 704
            +R  K+ E   KGL+P+  K++R+H A  L E Y   +  EE     D V+           GK  F  ++D SG IQLY  K+ +  D ++  K   D+GDI+GV+G M +T  GE+SV    F +LTKSL PLP+KYHGL D+++RYRQRY+D+I+ P+
Sbjct:   11 VRRDKLAEHMEKGLDPFGGKFERSHQATDLIEKYDSYSK-EELEETTDEVTIAGRLMTKRGKGKAGFAHIQDLSGQIQLYVRKDMIGDDAYEVFKS-ADLGDIVGVTGVMFKTNVGEISVKAKQFQLLTKSLRPLPEKYHGLKDIEQRYRQRYLDLITNPD 169          
BLAST of FC930645 vs. ExPASy Swiss-Prot
Match: SYK_FERNB (Lysyl-tRNA synthetase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=lysS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.207e-28
Identity = 62/163 (38.04%), Postives = 101/163 (61.96%), Query Frame = 3
Query:  216 RALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPE 704
            R  RIK+++ELR+ G+ PY Y +++TH+   +++ + HL+NGE ++     VS           GK AF  ++D  G IQ Y  K++  ++ ++  K  V +GDI+GV G + ++  GE+++LV  F +L K L P+P+K+HG+ D +  YRQRYVDMI+  E
Sbjct:    6 REARIKEIDELRNLGINPYPYSYNKTHTTEDIKKQFEHLSNGEVTDKR---VSTAGRIMSIREHGKSAFFHIKDTYGRIQAYIRKDK--TENYEFFKERVTVGDIVGVEGIVFKSNTGEITILVEKFELLVKPLRPMPEKWHGIKDKEVLYRQRYVDMIANDE 163          
The following BLAST results are available for this feature:
BLAST of FC930645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
SYK_SYNSC1.524e-3144.91Lysyl-tRNA synthetase OS=Synechococcus sp. (strain... [more]
SYK_PROM91.524e-3142.94Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_PROM29.875e-3141.81Lysyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYK_BACST9.875e-3141.07Lysyl-tRNA synthetase OS=Bacillus stearothermophil... [more]
SYK_CARHZ4.901e-3042.77Lysyl-tRNA synthetase OS=Carboxydothermus hydrogen... [more]
SYK_ENTFA3.177e-2940.24Lysyl-tRNA synthetase OS=Enterococcus faecalis GN=... [more]
SYK_BACHD4.149e-2943.03Lysyl-tRNA synthetase OS=Bacillus halodurans GN=ly... [more]
SYK_STAS19.243e-2941.98Lysyl-tRNA synthetase OS=Staphylococcus saprophyti... [more]
SYK_OCEIH1.207e-2842.24Lysyl-tRNA synthetase OS=Oceanobacillus iheyensis ... [more]
SYK_FERNB1.207e-2838.04Lysyl-tRNA synthetase OS=Fervidobacterium nodosum ... [more]

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Properties
Property NameValue
Genbank descriptionC34009G05EF PostHarvC1 Citrus clementina cDNA clone C34009G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930645 ID=FC930645; Name=FC930645; organism=Citrus clementina; type=EST; length=716bp
GGAGTGGAGTGAAAGCAGAGAAAACAAAGATGGAGGCTTTGAAGTTGTGG
AGTACTCTATCCTCTCTACCAATCAGCTTCCGACACGTCATCCGCCGGCG
AACCTCTTTGACGTTTGTCCGCTGTCGCTCTTCCACTTCTATCACCGTTT
CCGCCGGCACTAGAAACCGTCGTGCTTCATCTTCTTCTACCTCCACTTCT
GACCGCGAGGCCGTTCGTGCCCTGCGCATTAAGAAGGTAGAAGAATTGAG
GAGCAAAGGGTTGGAGCCCTATGCATATAAGTGGGATAGGACGCATTCTG
CAAATCAGCTACAAGAGATATATAGGCATTTAGCAAATGGTGAAGAGTCG
AATAGTGAGAATGATCATGTATCTGTAGCTGGGAGAGTTGTTGCTCGTAG
AGCATTTGGGAAGCTTGCATTTTTGACACTAAGAGATGACTCGGGTACGA
TACAGCTTTACTGCGAGAAGGAAAGGCTTTTAAGTGATCAGTTTGATCAG
TTAAAGGTATTTGTTGATATTGGTGATATACTGGGTGTTAGTGGCTCAAT
GAAACGGACAGAAAAAGGTGAGCTTTCTGTTCTTGTCAATTCATTCGTGA
TTCTGACAAAATCTCTACTTCCGCTACCAGACAAATATCATGGTTTAACT
GATGTGGATAAACGTTACCGCCAAAGGTACGTAGATATGATTTCAAAACC
TGAAGTAGCTGATGTA
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