FC930654

Overview
NameFC930654
Unique NameFC930654
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15197 contig Ccv1_Contig15197:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECODH (Probable phosphoglycerate mutase gpmB OS=Escherichia coli (strain K12 / DH10B) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECOBW (Probable phosphoglycerate mutase gpmB OS=Escherichia coli (strain K12 / BW2952) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECO8A (Probable phosphoglycerate mutase gpmB OS=Escherichia coli O8 (strain IAI1) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECO81 (Probable phosphoglycerate mutase gpmB OS=Escherichia coli O81 (strain ED1a) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLETRNIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECO7I (Probable phosphoglycerate mutase gpmB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLETRNIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECO5E (Probable phosphoglycerate mutase gpmB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECO57 (Probable phosphoglycerate mutase gpmB OS=Escherichia coli O157:H7 GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECO55 (Probable phosphoglycerate mutase gpmB OS=Escherichia coli (strain 55989 / EAEC) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECO45 (Probable phosphoglycerate mutase gpmB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLETRNIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
[Close]
BLAST of FC930654 vs. ExPASy Swiss-Prot
Match: GPMB_ECO24 (Probable phosphoglycerate mutase gpmB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gpmB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 
Query:  245 EIIVVRRGETPWNVQGKVQ--LDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 694
            ++ +VR GET WN + ++Q   D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151
The following BLAST results are available for this feature:
BLAST of FC930654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GPMB_ECODH4.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_ECOBW4.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_ECO8A4.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_ECO814.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_ECO7I4.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_ECO5E4.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_ECO574.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_ECO554.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_ECO454.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_ECO244.773e-1336.18Probable phosphoglycerate mutase gpmB OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC34009H02EF PostHarvC1 Citrus clementina cDNA clone C34009H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930654 ID=FC930654; Name=FC930654; organism=Citrus clementina; type=EST; length=771bp
GATGAGTACACTGCGCACTTGGTGCACTTTTAAACTACCGGGCCGTTTTA
CCGCTACGCGTTTAATTTCATCAGCACATTCCGTCTCTGTTAATAATATT
CTTGCATGCGTAAAAATCCCAAAACATTTCTGCGCGGAATCGGAACGGAT
TCAGAGGCACTCAAAACCCGGGAACATGGCCGAGTCAACGGAGTCTCCAG
CAGTCATGAACGGCAGCTCTGCCTCTGTTGGGCCTGATTATTGTGAGATC
ATTGTGGTGCGTCGCGGTGAAACGCCTTGGAACGTTCAAGGAAAAGTTCA
GTTAGATGTTGAATTGAATGAAGTTGGAAGAGAGCAAGCTGTTTCTGTGG
CTGAGCGGCTGGCTAAGGAATTTAAAATTTCTGTTATCTATTCTTCTGAC
CTGAAGCGAGCACTCGAAACTGCACAGACAATTGCAAACAGATGTGGTGG
GCTAAAGGTCATTGAAGATCCTGAACTAAGGGAAAGACATCTTGGAGATC
TTCAAGGCCTTGTTTTCCGTGAAGCAGCCAAAGTCTGTCCTATAGCATAT
CAAGCATTTTTATCTGGCAAGACAGATCAAGATATCCCTGGTGGTGGAGA
AAGTCTTGATCAACTTTATCGACGGTGCACGTCTGCATTGCAGAGAATTG
CTAGGAAGCATATAGGAGAGCGAATAGTAGTTGTGACTCATGGTGGTGTA
ATCAGAACACTCTACCACGGGCTTGCTCAACAAAAAGCTGAAGGTAGGTC
CTGAATCATCTATCACATATT
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