FC930655

Overview
NameFC930655
Unique NameFC930655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 366
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 366
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  +LF+Y STD  M+R+L +Y  Y
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD--MDRVLLKYTEY 72          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWT----------------------LEYSKLKARMEVLQRNQ---KHFMGEDLADLSLKELQSVEQQI 543
            M R R +++RIE+   RQVTFSKRR GL KKA E++VLCDA+VAL+VFS+ GKL ++++ + M  I+++Y  +    + L   + +P+ +                        LE+SK  +  E L       +   GE+L  LS++ELQ +E+ +
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSN-MNEIIDKYTTH---SKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNL 153          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 37/70 (52.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERY 357
            MGR ++ +++I N+ NRQ TF+KR++GL+KKA E+S+LCD E+A+IVFS+  KLF+YS+   M+++L RY
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRD-MDKLLIRY 71          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 38/73 (52.05%), Postives = 60/73 (82.19%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 366
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD ++ALI+F++  +LF+Y++ S M+R+L +Y  Y
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYAS-SDMDRVLLKYTEY 72          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 48/139 (34.53%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY--STDSCMERILERYERYCYAE-----RQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGR ++KRIEN   RQ TF KRR GL KKA E++VLCDA++ L++FS  GKL+ +   T   +   +ERYE   + +     RQ +  E+E          K+ +  ++L++  +    +D  + ++  L+++E  +
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELE----------KVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNL 129          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 41/109 (37.61%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  226 GLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDS-CMERILERYERYCYAERQLQAN--EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            GLLKKA E+++LCDA++ +I+FS+ GK+FE+S+    M  I++RY++       L  N   +  N     E +++K  ++ LQ   +HF GEDL  L++ E+  +EQQ+
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK-------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQL 103          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  151 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY---STDSCMERILERYERYCYAERQLQANEIEPN 411
            GR ++++ +++N+ N QVTFSKRRSGL KKA E+  LC AEVA++VFS   K+F +   + DS ++R +       +    +Q  E   N
Sbjct:    7 GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRN 96          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 47/147 (31.97%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  145 NMGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY---STDSCMERILERYERYCYAERQLQ---ANEIEPNGNWT-----LEYSKLKA------RMEVLQRNQKHFMGEDLADLSLKELQSVE 534
            ++GR ++ + +I+ + +RQVTFSKRR+GL KKA E+  LC AE+ +IVFS   K F +   S +S ++R + R        +QLQ   A   E N   T     +E  K K       R E ++R+  ++  + + ++++ +LQ ++
Sbjct:   61 SIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMK 207          
The following BLAST results are available for this feature:
BLAST of FC930655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2C_BOVIN6.621e-1655.41Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2B_HUMAN6.621e-1655.41Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MAD55_ORYSJ8.648e-1635.03MADS-box transcription factor 55 OS=Oryza sativa s... [more]
SRFC_DICDI1.927e-1552.86Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_MOUSE1.927e-1552.05Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
MAD32_ORYSJ3.286e-1534.53MADS-box transcription factor 32 OS=Oryza sativa s... [more]
AP32_ASAEU2.782e-1437.61MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
AGL62_ARATH1.688e-1140.00Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]
AGL61_ARATH4.910e-1131.97Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC34009H03EF PostHarvC1 Citrus clementina cDNA clone C34009H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930655 ID=FC930655; Name=FC930655; organism=Citrus clementina; type=EST; length=697bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATCTCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTAGTGGAGAATTGCTGGTGATAATTATTAATAGATAGTTAATATG
GGGAGAGGAAGGGTGCAGCTGAAGAGGATAGAGAACAAGATCAATAGACA
AGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAGGCCCATGAGA
TCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAA
GGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGAATCCTTGA
ACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGCAAATGAGA
TTGAACCAAATGGAAACTGGACATTGGAATATTCCAAGCTTAAAGCTAGG
ATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAGGATCTTGC
AGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGATTGNATTCT
GGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTCAATCCAT
TTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAACAACTTGN
CTTGCAAGAAGGTAAAAGAAAAGGAGAAGCTATTGAGCCAAAGAGCG
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