FC930655

Overview
NameFC930655
Unique NameFC930655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.804e-37
Identity = 80/134 (59.70%), Postives = 104/134 (77.61%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA--ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ +   M + LE+Y++  YA  E  +Q  E E       EY KLKAR+E LQR Q++ +GEDL  L +KEL+S+E+Q+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQL 134          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.804e-37
Identity = 80/134 (59.70%), Postives = 104/134 (77.61%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA--ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ +   M + LE+Y++  YA  E  +Q  E E       EY KLKAR+E LQR Q++ +GEDL  L +KEL+S+E+Q+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQL 134          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 78/135 (57.78%), Postives = 106/135 (78.52%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCY-AERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIXF 549
            MGRGRV+LKRIENKINRQVTFSKRR+GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ + + + + LE+Y   CY A+    A     + +W  E S+LK ++E LQR+Q+H +GEDL  LS+KELQ +E+Q+ +
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS-AGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEY 134          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.425e-36
Identity = 78/133 (58.65%), Postives = 103/133 (77.44%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEP-NGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + LERY++  Y   +   +  E    +   EY KLKAR E LQR+Q++ +GEDL  L+ KEL+S+E+Q+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQL 133          

HSP 2 Score: 21.557 bits (44), Expect = 8.425e-36
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 2
Query:  539 RLXSGLKLIRSRKNQLMLQSI 601
            +L   LK IRS + QLML  +
Sbjct:  132 QLDMSLKQIRSTRTQLMLDQL 152          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35
Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV+LIVFS +GKL+E+ + S M + LERY++  Y   ++     +   N   EY KLK R E LQR Q++ +GEDL  L+ KEL+ +E+Q+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQL 132          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35
Identity = 75/132 (56.82%), Postives = 100/132 (75.76%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + L+RY++  Y   ++     +   N   EY KLK R E LQR Q++ +GEDL  L+ KEL+ +E+Q+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQL 132          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.189e-35
Identity = 80/139 (57.55%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA-------ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M R LERY++  Y         R+  A E+        EY KLK R + LQR Q++ +GEDL  LS KEL+S+E+Q+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQ----QEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQL 135          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35
Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWT------------LEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRV+LKR+ENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALIVFS +GKL+E+ + S M + LERY++  Y           P GN T             EY KLKAR E LQR+Q++ MGEDL  LS K+L+++E+Q+
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYG---------APEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQL 135          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.369e-35
Identity = 72/132 (54.55%), Postives = 102/132 (77.27%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRG+V L+RIENKI+RQVTF+KRR+GLLKKA+E+S+LCDAEVAL++FS  G+L+++S+ S M + LERY+RY YA +   A   +   N   EY  LKA +E+LQ++Q++ +GEDLA L+  EL+ +E Q+
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQV 132          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 79/139 (56.83%), Postives = 101/139 (72.66%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA-------ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M R LERY++  Y         R+  A E+        EY KLK R + LQR Q++ +GEDL  LS KEL+ +E+Q+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQ----QEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQL 135          
The following BLAST results are available for this feature:
BLAST of FC930655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MADS7_ORYSJ6.804e-3759.70MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI6.804e-3759.70MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MAD17_ORYSJ1.161e-3657.78MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL9_PETHY8.425e-3658.65Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
SEP2_ARATH1.676e-3557.58Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP1_ARATH1.676e-3556.82Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
SEP3_ARATH2.189e-3557.55Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MTF1_PEA3.734e-3556.25MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MAD34_ORYSJ6.369e-3554.55MADS-box transcription factor 34 OS=Oryza sativa s... [more]
AGL9_SINAL1.086e-3456.83Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34009H03EF PostHarvC1 Citrus clementina cDNA clone C34009H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930655 ID=FC930655; Name=FC930655; organism=Citrus clementina; type=EST; length=697bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATCTCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTAGTGGAGAATTGCTGGTGATAATTATTAATAGATAGTTAATATG
GGGAGAGGAAGGGTGCAGCTGAAGAGGATAGAGAACAAGATCAATAGACA
AGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAGGCCCATGAGA
TCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAA
GGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGAATCCTTGA
ACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGCAAATGAGA
TTGAACCAAATGGAAACTGGACATTGGAATATTCCAAGCTTAAAGCTAGG
ATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAGGATCTTGC
AGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGATTGNATTCT
GGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTCAATCCAT
TTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAACAACTTGN
CTTGCAAGAAGGTAAAAGAAAAGGAGAAGCTATTGAGCCAAAGAGCG
back to top