FC930655

Overview
NameFC930655
Unique NameFC930655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            M R ++Q+K+I+N   RQVTFSKRR GL KKA E+SVLCDA+VALI+FS+ GKLF+YS+ S M++ILER + +     +L    +E        YS+L   +       +   GE+L  L+++ELQ +E+ +
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSS-MKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSL 131          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 60/139 (43.17%), Postives = 92/139 (66.19%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYC-------YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            M RG+ Q+KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIVFS +GKL+E+++ S  ++ +ERY  Y          ++ ++  + + +G        L  ++E L+  ++  +GE L + S++EL S+E ++
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASAS-TQKTIERYRTYTKENIGNKTVQQDIEQVKADADG--------LAKKLEALETYKRKLLGEKLDECSIEELHSLEVKL 130          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 58/132 (43.94%), Postives = 89/132 (67.42%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRG++++KRIEN  NRQVT+SKRR+G+LKKA EISVLCDA V++I+F++ GK+ E+S+ S ++ IL++Y +     R L A     + N   E +K+K   + +Q   +H  GED+  L+ +EL  +E  +
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVD-ILDQYHKLT-GRRLLDAK----HENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDAL 126          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 61/180 (33.89%), Postives = 107/180 (59.44%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQ----LQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIXFW-S*THSIKKEPTHASIHFRASEKGQVIERAKQLXLQEGKRK 672
            M RG+VQ++RIEN ++RQVTF KRR GLLKKA E+SVLCDA+V +I+FS++GKL E +T+  M  ++ERY+      +     LQ  ++   G +      L+  +++LQR  +   G    +++L +L ++E+ +  W     + K +     I F  +++G +++ A ++  ++ K +
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQRQQVAEQGIFL-----LREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEG-ILKEANEMLQEKVKEQ 174          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 55/134 (41.04%), Postives = 90/134 (67.16%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQ--ANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRG++ +++I++  +RQVTFSKRR GL+KKA E+++LCDAEV LI+FS   KL+++++ S ++  +ER+      E++L   A+E++    W  E   L+  +  LQ N +   G +L  LS+KELQ++E Q+
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSS-VKSTIERFNTAKMEEQELMNPASEVK---FWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQL 130          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 58/132 (43.94%), Postives = 90/132 (68.18%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            MGRG++++KRIEN  NRQVT+SKRR+G+LKKA EISVLCDA V++I+F++ GK+ E+S+ S ++ IL++Y +     R+L   + E   N   E +K+K   + +Q   +H  GED+  L+ +EL  +E  +
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVD-ILDQYHK--LTGRRLWDAKHE---NLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDAL 126          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 59/134 (44.03%), Postives = 91/134 (67.91%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTL--EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            M RG+ ++KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVAL++FS + KL+E+S+ S +   +ERY+R     +++  N    + +     E S L  ++E L+ +++  +GE +   S++ELQ +E Q+
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSS-IAATIERYQRRI---KEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQL 130          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 66/183 (36.07%), Postives = 111/183 (60.66%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIXFWS*THSIKKEPTHASIHFRASEKGQVIERAKQLXLQEGKRKGEAIEPK 693
            MGRG++++KRIEN  NRQVT+SKRR+G++KKA EI+VLCDA+V+LI+F   GK+ EY S  + +  +L+ Y++   + R+L   + E   N + E  ++K   + +Q   +H  GED+  L+ KEL  +E+ +     T+ +      +SI  + SE  +++ +  Q+  +E K+   A+  K
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK--TSGRRLWDAKHE---NLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGL-----TNGL------SSISAKQSEILRMVRKNDQILEEEHKQLQYALHQK 167          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 51/130 (39.23%), Postives = 86/130 (66.15%), Query Frame = 1
Query:  154 RGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQI 543
            R R+ ++RI+N   RQVTFSKRR GL KKA E+S+LCDAEV L+VFS  GKLF++++ S ME+I++RY  +    ++ + ++++  G  +   ++LK  +       +   GE+L  L++++LQ +E+ +
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTS-MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSL 150          
BLAST of FC930655 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 52/137 (37.96%), Postives = 89/137 (64.96%), Query Frame = 1
Query:  148 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANE-IEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLAD-LSLKELQSVEQQIXFW 552
            M RG+VQL+RIEN ++RQVTF KRR+GLLKKA E+S+LC+A++ +I+FS  GKL++ +T   ME ++ERY+     +     ++ ++P      E   LK  + +LQ+  ++  G    + ++++EL ++E+ +  W
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDPK----QEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIW 133          
The following BLAST results are available for this feature:
BLAST of FC930655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
JOIN_SOLLC5.592e-2343.94MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
MAD50_ORYSJ9.539e-2343.17MADS-box transcription factor 50 OS=Oryza sativa s... [more]
FBP1_PETHY1.246e-2243.94Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MAD33_ORYSJ2.125e-2233.89MADS-box transcription factor 33 OS=Oryza sativa s... [more]
AGL17_ARATH2.125e-2241.04Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
GLOB_TOBAC2.775e-2243.94Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
AGL19_ARATH3.625e-2244.03Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MADS2_PETHY6.183e-2236.07Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD47_ORYSJ2.350e-2139.23MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD26_ORYSJ2.350e-2137.96MADS-box transcription factor 26 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34009H03EF PostHarvC1 Citrus clementina cDNA clone C34009H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930655 ID=FC930655; Name=FC930655; organism=Citrus clementina; type=EST; length=697bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATCTCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTAGTGGAGAATTGCTGGTGATAATTATTAATAGATAGTTAATATG
GGGAGAGGAAGGGTGCAGCTGAAGAGGATAGAGAACAAGATCAATAGACA
AGTGACTTTCTCTAAGAGAAGGTCTGGTTTATTGAAAAAGGCCCATGAGA
TCTCTGTGCTTTGTGACGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAA
GGCAAGCTCTTTGAATACTCTACTGATTCATGCATGGAAAGAATCCTTGA
ACGATATGAGAGGTATTGTTATGCGGAGAGGCAGCTTCAAGCAAATGAGA
TTGAACCAAATGGAAACTGGACATTGGAATATTCCAAGCTTAAAGCTAGG
ATGGAGGTTTTACAAAGAAATCAAAAGCATTTCATGGGAGAGGATCTTGC
AGACTTAAGTCTCAAAGAGCTTCAAAGTGTAGAGCAGCAGATTGNATTCT
GGTCTTAAACTCATTCGATCAAGAAAGAACCAACTCATGCTTCAATCCAT
TTCAGAGCTTCAGAAAAAGGACAAGTTATTGAAAGAGCAAAACAACTTGN
CTTGCAAGAAGGTAAAAGAAAAGGAGAAGCTATTGAGCCAAAGAGCG
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